CN181964

Overview
NameCN181964
Unique NameCN181964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1123..1772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.565e-85
Identity = 149/167 (89.22%), Postives = 150/167 (89.82%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF+
Sbjct:   43 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.565e-85
Identity = 149/167 (89.22%), Postives = 150/167 (89.82%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF+
Sbjct:   43 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.325e-84
Identity = 148/167 (88.62%), Postives = 149/167 (89.22%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDDDAFE
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.325e-84
Identity = 147/167 (88.02%), Postives = 149/167 (89.22%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDD+ F+
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.730e-84
Identity = 148/167 (88.62%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               SQPLPDDDDD FE
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.033e-84
Identity = 147/167 (88.02%), Postives = 149/167 (89.22%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDD+AFE
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 309.686 bits (792), Expect = 8.586e-84
Identity = 146/167 (87.43%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D               +QPLPDDDDDAFE
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.913e-83
Identity = 146/167 (87.43%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID               +QPLPDDDD+AFE
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.261e-83
Identity = 145/167 (86.83%), Postives = 147/167 (88.02%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID               +QPLPDDDDD FE
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CN181964 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.240e-82
Identity = 145/167 (86.83%), Postives = 147/167 (88.02%), Query Frame = 1 
Query:   10 FLYNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 510
            F  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +  LPDDDD+AFE
Sbjct:   55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CN181964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
RAN1B_LOTJA1.565e-8589.22GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA1.565e-8589.22GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA1.325e-8488.62GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC1.325e-8488.02GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH1.730e-8488.62GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC5.033e-8488.02GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH8.586e-8487.43GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC1.913e-8387.43GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH4.261e-8386.83GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC1.240e-8286.83GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181964 ID=CN181964; Name=CN181964; organism=Citrus sinensis; type=EST; length=651bp
CGAGGTGGATTTCTTTACAATTGTGGCAAAATCCGTTTCTACTGCTGGGA
CACTGCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCC
ATGGGCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATAC
AAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATAT
ACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCA
AGGCAAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAG
ATTTCTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGC
CAGGAAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTC
TCGCTCCTCCAGAAGTACAGATTGACTTAGCTGCACAGCAACAACATGAA
GCCGAGCTTGCCGCAGCAGCTAGCCAGCCTCTTCCTGATGACGATGATGA
TGCATTTGAGTAGAGAGGAACTGCTTGGACGGGTGTAGGCGCAACCTCTC
ATACTGCTGCTTGACTTAAAAATGCTGTTATTTTGGAAATTTTCAACACA
TGGCGGAGATTTGGTTTATCAGCGTAGGGGTGACCATCGAGAACAATGGA
T
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