CN181957

Overview
NameCN181957
Unique NameCN181957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9699 contig Csv1_Contig9699:119..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMERL_ARATH (Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 6.496e-92
Identity = 154/193 (79.79%), Postives = 180/193 (93.26%), Query Frame = 2
Query:   71 MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 649
            MVSANREMAVYCFDTLV+HYN+E+ PPPAF+E  HPLFVTWKK+VNGGEPRLRGCIGTLEAR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+CTVS+LTD+E A +YLDWEVG HG+IIEFT+PE +T+RSATYLPEV AHEGWTK+EAIDSL+RKA ++G ITE++R+RI LTRYQSTLF++HYS+Y SY
Sbjct:    1 MVSANREMAVYCFDTLVSHYNNEETPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLEARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGIIIEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSY 193          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMERL_PONAB (AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.053e-49
Identity = 98/192 (51.04%), Postives = 124/192 (64.58%), Query Frame = 2
Query:   68 KMVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDY 640
            K +    EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK  F  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  100 KNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMERL_HUMAN (AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.053e-49
Identity = 98/192 (51.04%), Postives = 124/192 (64.58%), Query Frame = 2
Query:   68 KMVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDY 640
            K +    EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK  F  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  100 KNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMERL_MOUSE (AMMECR1-like protein OS=Mus musculus GN=Ammecr1l PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.987e-49
Identity = 98/192 (51.04%), Postives = 124/192 (64.58%), Query Frame = 2
Query:   68 KMVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDY 640
            K +    EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK  F  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  100 KNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKSIKLTRYRSEKVTISYAEY 287          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMER1_PONAB (AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.515e-48
Identity = 99/195 (50.77%), Postives = 128/195 (65.64%), Query Frame = 2
Query:   68 KMVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 649
            KMV  + EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK  +  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  123 KMV-VSAEMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMER1_MOUSE (AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.515e-48
Identity = 99/195 (50.77%), Postives = 128/195 (65.64%), Query Frame = 2
Query:   68 KMVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 649
            KMV  + EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK  +  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  134 KMV-VSAEMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 323          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMER1_HUMAN (AMME syndrome candidate gene 1 protein OS=Homo sapiens GN=AMMECR1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.515e-48
Identity = 99/195 (50.77%), Postives = 128/195 (65.64%), Query Frame = 2
Query:   68 KMVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 649
            KMV  + EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK  +  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  123 KMV-VSAEMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: Y5902_DROME (Uncharacterized protein CG5902 OS=Drosophila melanogaster GN=CG5902 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.781e-45
Identity = 91/188 (48.40%), Postives = 120/188 (63.83%), Query Frame = 2
Query:   89 EMAVYCFDTLVAHYNSEDAPP-PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 649
            +M ++CF+ L    N+ D P  P F    +PLFVTWK    G + RLRGCIGT  A  L +G ++YALTSA KD RF PI   ELP L  +VSIL +FE A  +LDW++G HG+ IEF   E   +R+ATYLP+VA  +GW +++ IDSL+RK  +   IT   RK I+LTRY+S    +HY +Y  Y
Sbjct:   48 DMCLFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKI---GRDKRLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFL-TERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEYREY 231          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: AMERL_CAEEL (Uncharacterized protein R166.3 OS=Caenorhabditis elegans GN=R166.3 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.467e-43
Identity = 92/195 (47.18%), Postives = 118/195 (60.51%), Query Frame = 2
Query:   71 MVSANREMAVYCFDTLVAHYNSEDAPP--PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 649
            M SAN +MAVYCFD + A  N E  PP        + PLFVTWKK   G +  LRGCIGT     L  G  +YA TSA  D RF PI   E+PSL+C VS+L +FE  +N+ DW +G HG+ + F D      RSA +LPEVA  +GW  VE ID L+RK+ + G I ++LR  +R+ R+QS+   L Y DY +Y
Sbjct:    1 MTSANIQMAVYCFDVINAQLNREKEPPVPKEIPNVKLPLFVTWKK---GHQHDLRGCIGTFSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHGVRMNFDDGH--RNRSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNY 190          
BLAST of CN181957 vs. ExPASy Swiss-Prot
Match: YKQ3_SCHPO (Uncharacterized protein C688.03c OS=Schizosaccharomyces pombe GN=SPAC688.03c PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.743e-26
Identity = 72/189 (38.10%), Postives = 99/189 (52.38%), Query Frame = 2
Query:   83 NREMAVYCFDTLVA---HYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKASFSGPITESLRKRIRLTRYQSTLFALHYSDY 640
            ++E   YCF+ + A   H    D           PLFV +     G + +LRGCIGT  AR L+     ++  +A  D RF PI   EL  LEC + +L DFE  ++ LDWEVG HG+ I+FT      R S+TYLP VAA + W + E ++SL+ KA + G I      +I  TRY+S      Y +Y
Sbjct:   14 DKEYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASG-KGHDKQLRGCIGTFRARPLVTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT--ANGIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGCTYEEY 196          
The following BLAST results are available for this feature:
BLAST of CN181957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AMERL_ARATH6.496e-9279.79Uncharacterized protein At2g38710 OS=Arabidopsis t... [more]
AMERL_PONAB3.053e-4951.04AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L P... [more]
AMERL_HUMAN3.053e-4951.04AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L P... [more]
AMERL_MOUSE3.987e-4951.04AMMECR1-like protein OS=Mus musculus GN=Ammecr1l P... [more]
AMER1_PONAB1.515e-4850.77AMME syndrome candidate gene 1 protein homolog OS=... [more]
AMER1_MOUSE1.515e-4850.77AMME syndrome candidate gene 1 protein homolog OS=... [more]
AMER1_HUMAN1.515e-4850.77AMME syndrome candidate gene 1 protein OS=Homo sap... [more]
Y5902_DROME7.781e-4548.40Uncharacterized protein CG5902 OS=Drosophila melan... [more]
AMERL_CAEEL1.467e-4347.18Uncharacterized protein R166.3 OS=Caenorhabditis e... [more]
YKQ3_SCHPO4.743e-2638.10Uncharacterized protein C688.03c OS=Schizosaccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001L17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181957 ID=CN181957; Name=CN181957; organism=Citrus sinensis; type=EST; length=649bp
CTTAGTAGGGAAAAAAAACCAGCCATTTCTCGAGCTTTGAAGAAATTGAA
AGAAATTTTTTTTTTAAAAAATGGTGTCGGCAAATCGGGAAATGGCGGTG
TACTGTTTCGACACTCTGGTGGCTCACTACAACAGCGAGGACGCTCCCCC
TCCCGCCTTTGACGAAGGCCAACACCCATTGTTTGTCACTTGGAAGAAAG
TGGTGAATGGTGGGGAACCTCGTTTGCGTGGATGTATCGGAACTCTGGAA
GCTCGTTGCTTGATTAATGGCTTTAAGGACTATGCTTTGACCAGTGCATT
GAAGGACCGAAGGTTTCCTCCTATACAAGCTAGAGAGCTGCCATCCTTGG
AATGTACAGTTTCTATTTTGACTGATTTTGAAACTGCTAACAACTATCTT
GACTGGGAGGTTGGAACACATGGTTTAATTATTGAGTTTACTGACCCTGA
ATATAGTACAAGGCGAAGTGCCACATACCTTCCTGAAGTGGCTGCCCATG
AAGGATGGACTAAAGTGGAGGCAATCGACTCACTGATGCGAAAAGCAAGC
TTCAGTGGTCCCATCACCGAGTCACTCCGCAAGCGTATACGACTGACTCG
TTACCAGAGCACACTATTTGCATTGCACTACAGCGACTATGCCTCTTAT
back to top