CN181956

Overview
NameCN181956
Unique NameCN181956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5967 contig Csv1_Contig5967:6..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 3.191e-92
Identity = 159/168 (94.64%), Postives = 166/168 (98.81%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            MGRVIRAQRKGAGSVFKSHTHHRKGPARFR+LDFGERNGYLKGVITE+IHDPGRGAPLARVTFRHPFRY+HQKELFVAAEGMYTGQFVYCG+KATL+VGNVLPLRSIPEGAVVCNVEH VGDRGVFARCSGDYA+VISHNPDN TTR+KLPSGAKKIVPSGCRAMIGQ
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQ 168          

HSP 2 Score: 23.0978 bits (48), Expect = 3.191e-92
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  569 RTEKPLLKAG 598
            RTEKP+LKAG
Sbjct:  174 RTEKPMLKAG 183          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 8.480e-90
Identity = 154/168 (91.67%), Postives = 165/168 (98.21%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+TEIIHDPGRGAPLARV FRHPFR++ QKELFVAAEGMYTGQF+YCG+KATLVVGNVLPLRSIPEGAV+CNVEHHVGDRGVFAR SGDYA+VI+HNPDNDT+RIKLPSG+KKIVPSGCRAMIGQ
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQ 168          

HSP 2 Score: 23.0978 bits (48), Expect = 8.480e-90
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  569 RTEKPLLKAG 598
            RTEKP+LKAG
Sbjct:  174 RTEKPMLKAG 183          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.106e-89
Identity = 156/168 (92.86%), Postives = 163/168 (97.02%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            MGR+IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITE+IHDPGRGAPLARVTFR+PFRY HQKELFVAAEGMYTGQFVYCG+KATL+VGNVLPLRSIPEGAVVCNVEH VGDRGVFARCSG YA+VISHNPDN TTRIKLPSG+KKIVPSGCR MIGQ
Sbjct:    1 MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQ 168          

HSP 2 Score: 23.0978 bits (48), Expect = 1.106e-89
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  569 RTEKPLLKAG 598
            RTEKP+LKAG
Sbjct:  174 RTEKPMLKAG 183          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 1.106e-89
Identity = 155/168 (92.26%), Postives = 165/168 (98.21%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+TEIIHDPGRGAPLARVTFRHPFR++ QKELFVAAEGMYTGQF+YCG+KATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGV AR SGDYA+VI+HNPD+DTTRIKLPSG+KKIVPSGCRAMIGQ
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQ 168          

HSP 2 Score: 23.0978 bits (48), Expect = 1.106e-89
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  569 RTEKPLLKAG 598
            RTEKP+LKAG
Sbjct:  174 RTEKPMLKAG 183          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 4.433e-81
Identity = 141/169 (83.43%), Postives = 158/169 (93.49%), Query Frame = 1
Query:   49 MGRVIRAQRKGA-GSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQ 552
            MGRVIRAQRKGA GSVFKSHTHHRKGPA+FRSLD+GERNGYLKG++TEIIHDPGRGAPLARV FRHPFRY  QKELFVAAEGMYTGQ++YCG+KA L+VGNVLPL SIPEGAV+CNVE HVGDRG  AR SGDYA+VI+HNP+++TTR+KLPSG+KKI+PS CRAMIGQ
Sbjct:    1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQ 169          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 5.817e-65
Identity = 115/167 (68.86%), Postives = 138/167 (82.63%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MGRVIRAQRKGAGSVFK+H   RKG A+ RSLDF ER+GY++GV+ +IIHDPGRGAPLA V FR P+RY+ +KELF+A EGM+TGQFVYCGRKATL +GNV+PL  +PEG ++CN+E   GDRG  AR SG+YA VI+HN D   TR+KLPSGAKK+VPS  RAM+G
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVG 167          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 4.925e-64
Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MGRVIRAQRKGAGSVF++HT  RKG  + R LD+ ER+GYLKGV+ +IIHDPGRGAPLA V FR P+R++  K+LF+AAEGMYTGQFVYCGR+A L +GNVLP+  +PEG +VCN+E   GDRG  AR SG+YA VI+HNPD   TR+KLPSGAKK++PS  RAMIG
Sbjct:    1 MGRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIG 167          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.169e-63
Identity = 111/167 (66.47%), Postives = 138/167 (82.63%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGV+ +IIHDPGRGAPLA V FR P++++ +KELF+A EG+YTGQFVYCG+KATL VGNV+P+ ++PEG +VCN+E  +GDRG  AR SG++A VI HNPD   TR+KLPSGAKK++PS  R M+G
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 167          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.169e-63
Identity = 111/167 (66.47%), Postives = 138/167 (82.63%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGV+ +IIHDPGRGAPLA V FR P++++ +KELF+A EG+YTGQFVYCG+KATL VGNV+P+ ++PEG +VCN+E  +GDRG  AR SG++A VI HNPD   TR+KLPSGAKK++PS  R M+G
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 167          
BLAST of CN181956 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 5.445e-63
Identity = 109/167 (65.27%), Postives = 138/167 (82.63%), Query Frame = 1
Query:   49 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIG 549
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ERNGY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELFVAAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC VE   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVG 167          
The following BLAST results are available for this feature:
BLAST of CN181956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_SOLLC3.191e-9294.6460S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH8.480e-9091.6760S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_TOBAC1.106e-8992.8660S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL81_ARATH1.106e-8992.2660S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL82_ARATH4.433e-8183.4360S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_DROME5.817e-6568.8660S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_ANOGA4.925e-6468.2660S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_SPOFR4.169e-6366.4760S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR4.169e-6366.4760S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_XENLA5.445e-6365.2760S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001L16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181956 ID=CN181956; Name=CN181956; organism=Citrus sinensis; type=EST; length=600bp
CAAAAAGCCCCAAAACCCTAGACAGAGAGTCACGGCGAGTCGATTCAAAT
GGGACGAGTCATTAGAGCACAGCGTAAGGGAGCGGGCTCCGTCTTCAAGT
CGCACACACACCACCGCAAGGGCCCGGCCAGGTTCCGCTCGCTTGATTTC
GGGGAACGCAACGGCTACCTGAAGGGAGTCATAACGGAGATCATCCATGA
TCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCACGTTTCGTCACCCGTTTA
GGTACCAGCACCAGAAGGAGCTGTTCGTAGCGGCTGAAGGGATGTACACT
GGGCAGTTCGTGTACTGCGGAAGGAAGGCGACTTTGGTTGTCGGAAATGT
GTTGCCCTTGCGATCGATCCCTGAAGGAGCGGTGGTTTGTAATGTGGAGC
ATCACGTGGGTGATCGCGGTGTCTTTGCCAGATGTTCGGGTGATTATGCT
GTTGTCATTAGTCATAATCCAGATAACGACACTACTCGGATTAAGCTCCC
ATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGTGCTATGATTGGTC
AAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTTGAAGGCAGGAAA
back to top