CN181950

Overview
NameCN181950
Unique NameCN181950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:404..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181950 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 84/212 (39.62%), Postives = 108/212 (50.94%), Query Frame = -1 
Query:   58 NGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD-ADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXSNYNIYKPVARSGGINVDVNVVPEP-ETTSSSNDPPTSLSLSLPGVD-----XXXXXXXXXXXSTQAVNAKASVPAPVSSDSGSKGLV--------GFSKEFMAVMQEMIKQEVRTYMAALEQ 648
            NGRTDNA+KNHWNSTLKRK             C GYD   +  S   +P  +KRSVSAGS  PV TGLYM                    +  ++KPV R G +     V+P P ET+SSS+DPPTSLSLSLPG D                +T + +   +  + +    G +G +        G   EFMAV+QEMIK EVR+YM  +++
Sbjct:   88 NGRTDNAVKNHWNSTLKRK-------------CGGYDHRGYDGSEDHRP--VKRSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAV-----VLPLPIETSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGAIEEMGKSFPGNGGEFMAVVQEMIKAEVRSYMTEMQR 278
The following BLAST results are available for this feature:
BLAST of CN181950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYB44_ARATH2.354e-2539.62Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181950 ID=CN181950; Name=CN181950; organism=Citrus sinensis; type=EST; length=648bp
TCCTTAAACCCCATCACCGCCCCCACCACTACCGTTATAACTCGCGCCAC
CTCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATC
ATCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTT
CGACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCA
CTGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCC
ACACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGA
CGTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAG
ATCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACG
CTTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAG
TCCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATT
TCAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTA
CAATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTT
TAAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTT
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