CN181944

Overview
NameCN181944
Unique NameCN181944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 83/100 (83.00%), Postives = 90/100 (90.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            RAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVL+TNV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQ+  SDGRTVTSNNVVP  W
Sbjct:  141 RAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 84/101 (83.17%), Postives = 93/101 (92.08%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            RAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVLI+NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+N QSLSFQ+T SDGRT+ SN+V P NW
Sbjct:  142 RAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 83/100 (83.00%), Postives = 92/100 (92.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            RAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  136 RAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 83/100 (83.00%), Postives = 92/100 (92.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            RAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQ+TASDGRTVTSNNV    W
Sbjct:  136 RAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 78/100 (78.00%), Postives = 91/100 (91.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            RAGIVP+++RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYLNGQSLSF++T SDG+T+ SNNV    W
Sbjct:  139 RAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.298e-44
Identity = 75/100 (75.00%), Postives = 93/100 (93.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            +AG+VP+S+RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ LNGQ+LSF++TASDGRTV SNN+ P +W
Sbjct:  142 KAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.298e-44
Identity = 79/100 (79.00%), Postives = 90/100 (90.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            RAGIVP+S+RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYLNGQ+LSF++T SDGRTV S N  P  W
Sbjct:  138 RAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.013e-40
Identity = 73/100 (73.00%), Postives = 86/100 (86.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            ++GI+P+ +RR+ C + GGIRFT+NGHSYFNLVL+TNVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYLNGQSLSF +T SD R+V S NV P  W
Sbjct:  143 KSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.629e-40
Identity = 73/100 (73.00%), Postives = 87/100 (87.00%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            +AG+VP+ +RR+ C +KGGIRFT+NGHSYFNLVLITNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L+GQ+LSF++T SDGRTV SNN  P NW
Sbjct:  141 KAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
BLAST of CN181944 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.434e-40
Identity = 76/101 (75.25%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  360 RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 659
            RAGIVP++FRR+PC K GGIRFT+NG+ YF+LVLITNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSLSFQ+T SDGRTV S +VVP +W
Sbjct:  144 RAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
The following BLAST results are available for this feature:
BLAST of CN181944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EXPA2_ORYSJ4.188e-4683.00Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA8_ARATH9.329e-4683.17Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ORYSJ9.329e-4683.00Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI9.329e-4683.00Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA1_ARATH4.630e-4578.00Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH2.298e-4475.00Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH2.298e-4479.00Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA5_ARATH2.013e-4073.00Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP14_ARATH2.629e-4073.00Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA2_ARATH3.434e-4075.25Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181944 ID=CN181944; Name=CN181944; organism=Citrus sinensis; type=EST; length=659bp
TTTTTATCAAAAAATTCTGAATTACACATTAAGATTGAAATTTTTTTTAT
CAATAAACTTTTAACTGATGTCTCAAATGATAACCAGAAATCACAACGCT
GAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATATAGAA
CACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCAC
AGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACCCCTAT
TCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATATACAA
ATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAGGTTTG
CCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGTCCTGC
CGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAA
TTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGT
CTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACAT
TTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTT
ATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAATTGGGACGAT
ACCGGCGCG
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