CN181926

Overview
NameCN181926
Unique NameCN181926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4990 contig Csv1_Contig4990:170..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.580e-64
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGV---DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +I LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+HVEA+ S   A  G    DDDLKAWD DF+K+DQATLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:    5 KIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.812e-64
Identity = 122/166 (73.49%), Postives = 133/166 (80.12%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDR-------------ATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +ITLKSSDGE FE+DEAVALESQTIKHMIEDDC DNGIPLPNVTSKILSKVIEYCK+HVEA++  +              A+   D+DLK WD++F+KVDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:    6 KITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.657e-55
Identity = 106/156 (67.95%), Postives = 124/156 (79.49%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKS----DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I LKSSDGE+FE++EAVA++SQTIKHMIEDDCADNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S  +D+LK WD++FVKVDQ TLFDLILAANYLNI  LLDLTC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:    8 IILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.058e-52
Identity = 103/156 (66.03%), Postives = 119/156 (76.28%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKS----DDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I LKSSDGE+FEV+EAVA+ESQTIKHMIEDDC DNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S  + +LK WD DFVKVD  TLFDL+ AANYLNI  LLDLTC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:    8 IILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.446e-51
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKKH       D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:    6 IVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH-----HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.764e-50
Identity = 101/153 (66.01%), Postives = 117/153 (76.47%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK-HVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK HV      D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSL DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:    6 IVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHV------DEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.306e-46
Identity = 94/154 (61.04%), Postives = 111/154 (72.08%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKV--DQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            + L SSDGE+F+V+EAVA++SQTI HMIEDDC  NG+P+ NVT  ILSKVIEYCKKHV +    D  T    D+LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:    5 VMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVS----DSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.061e-44
Identity = 92/153 (60.13%), Postives = 105/153 (68.63%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +I LKSSDG +FEV+E  A + QTI HM EDDC DNGIPLP VT KIL  VIEYC KH       D A    D+DLK WD +F++  Q+T+FDLI+AANYLNIKSLLDL CQTVADMIK  T E  RK FNI+ND+T          NQW FE
Sbjct:    5 KIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.385e-44
Identity = 92/154 (59.74%), Postives = 109/154 (70.78%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +I LKSSDG +FEV+E  A + Q I  HM E+DC DNGIPLPNVT KIL+ VIEYC KH       D A    DDDLK WD +F++ D +T+FDLI AANYLNIKSL DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:    5 KIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH-----HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.928e-43
Identity = 90/154 (58.44%), Postives = 108/154 (70.13%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +I L SSDGE+FEV+EAVA + + ++HMIEDDC    +PL NVT KILS V+EYCKKHV   +SD+          K WD +F+K  DQ T+F L+LAANYLNIK LLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP         N WAFE
Sbjct:    5 KIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDEESDE---------FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
The following BLAST results are available for this feature:
BLAST of CN181926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1A_ARATH4.580e-6476.92SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
SKP1B_ARATH7.812e-6473.49SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH8.657e-5567.95SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH1.058e-5266.03SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH4.446e-5166.45SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH3.764e-5066.01SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH4.306e-4661.04SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH1.061e-4460.13SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH1.385e-4459.74SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH9.928e-4358.44SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181926 ID=CN181926; Name=CN181926; organism=Citrus sinensis; type=EST; length=667bp
TGGACGATCGATCAGAATGTCAACGAGTAAGAAATCACGCTGAAGAGCTC
GGATGGAGAGGCGTTCGAGGTCGATGAAGCAGTGGCGTTGGAATCGCAGA
CGATCAAGCATATGATTGAGGACGATTGCGCCGACAACGGAATCCCTTTG
CCTAACGTTACCAGTAAGATCCTCTCTAAGGTCATCGAGTACTGCAAGAA
GCACGTCGAGGCATCTAAGTCCGACGATCGGGCCACTAGCGGCGTCGATG
ATGATCTCAAGGCTTGGGATACCGATTTCGTCAAAGTCGATCAGGCCACT
CTCTTTGATCTTATTCTTGCGGCAAACTACCTGAACATCAAGAGCTTGCT
GGACTTAACTTGCCAGACTGTTGCAGACATGATTAAGGGAAAGACTCCAG
AGGAGATCCGCAAGACATTCAATATCAAGAACGACTTTACCCCAGAAGAG
GAGGAAGAGGTTCGTCGGGAGAATCAGTGGGCTTTTGAGTGAAAGGATCT
CAAATGACCAATTTGTAATTGTGTCTTTTCTTTTTTGTTTTGCCTTCTTT
TTGTTGTTGCTGCTGACTCAAATGTCTTTAGCTGGTAAAAGCATCAAACC
ATTATTGTTTTAATGTCATATCATCCCAACCTTCTCTGTATCATTAATTG
TGAAGTCCTTTTGGATC
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