CN181925

Overview
NameCN181925
Unique NameCN181925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:847..1564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181925 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.875e-31
Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = -3 
Query:  429 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 713
            AGIV  LD LVKEFVAA+ +EKKAVF++IE  V+ LEGS +R+GKIYLKV+K Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST+
Sbjct:  269 AGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363
[Close]
BLAST of CN181925 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.243e-29
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = -3 
Query:  429 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 713
            AGIV SLDALVKE VAAS DEKKAV S+IE     L+GST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:  263 AGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357
The following BLAST results are available for this feature:
BLAST of CN181925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PDIA6_MEDSA9.875e-3170.53Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH9.243e-2968.42Probable protein disulfide-isomerase A6 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181925 ID=CN181925; Name=CN181925; organism=Citrus sinensis; type=EST; length=718bp
GAGGTTTTTATCGAAACTGTCATAATAAAATTAATATAAGTTAATCCCAG
TAAGTTTTTAAGTGCCTCTAAATATGAGTCACTTCTAATTATAGTTTTTT
TTCCATGTTCCTAAATGAAACAAAATAAGTAACTCGGCGGCGACATTAAC
GTTTAGAAACCAGAAAGCATCCCAAAATTGTAACTGTGAACGAACGTTTT
ATCTAAATCATTACACTACCTAATTGTACTTCTCTTAACACAAGTTTCAT
CATATGTGGTCATTTATGTCTGAGACCTCAAGATCTTTCCCCGTTAAAAG
AAGCTCTGCTCAAATAAATTCACAGCAACATCAGATGGCTGTGGTCCATC
AATCTCCATAAAGTCGACTTATAGGTAACCCCAGCCCAATTTGAGATGAA
TAAAAAAACATAATCCCACATATTAAGTGAATGTGGATAAAATATTTTTC
TTGAGGACGAATTCGTCCGCTTTTGCCGCGCTGATTGACTTGTCAAGCAT
ACGCTGGAGGCGATCAATTTCCTTCTTCGCATAATCACTCCCTTTGTCCA
TATAGTTCTTTGCAACTTTCAAGTAAATCTTCCCATGCCTGGCAGTGGAA
CCCTCAAGCACCTCAACTCCCCGTTCAATCTTTGAGAAGACTGCCTTCTT
CTCATCACCGCTAGCAGCAACAAATTCCTTCACCAAGGCATCTAAGCTCG
CAACTATACCCGCCGTTG
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