CN181920

Overview
NameCN181920
Unique NameCN181920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181920_ssr506 microsatellite CN181920_ssr506:506..517. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:123..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.649e-45
Identity = 101/136 (74.26%), Postives = 106/136 (77.94%), Query Frame = -3
Query:  218 KPAEEKKTSVXXXXXXXXXXXXXXXXXXXXAS--GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 619
            KPAEEKK++V                     S  G+       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   13 KPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.518e-45
Identity = 102/135 (75.56%), Postives = 105/135 (77.78%), Query Frame = -3
Query:  218 KPAEEKKT-SVXXXXXXXXXXXXXXXXXXXXASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 619
            KPAEEKK  +                     A+GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   13 KPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.518e-45
Identity = 102/137 (74.45%), Postives = 106/137 (77.37%), Query Frame = -3
Query:  218 KPAEEK---KTSVXXXXXXXXXXXXXXXXXXXXASGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 619
            KPAE+K   KT V                    A+GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 KPAEKKPAEKTPVAEKAPAEKKPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 178.718 bits (452), Expect = 2.242e-44
Identity = 93/102 (91.18%), Postives = 95/102 (93.14%), Query Frame = -3
Query:  218 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 3.825e-44
Identity = 99/136 (72.79%), Postives = 104/136 (76.47%), Query Frame = -3
Query:  218 KPAEEKKTSVXXXXXXXXXXXXXXXXXXXXAS--GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 619
            KPAEEKK++V                     S  G+       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   13 KPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.995e-44
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = -3
Query:  218 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 526
            S D       KS+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 SSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 8.520e-44
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = -3
Query:  218 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 526
            +GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.113e-43
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  218 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 493
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.898e-43
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = -3
Query:  218 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CN181920 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.898e-43
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = -3
Query:  218 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 523
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
The following BLAST results are available for this feature:
BLAST of CN181920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_MEDTR2.649e-4574.26Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B_GOSHI4.518e-4575.56Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC4.518e-4574.45Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B11_ARATH2.242e-4491.18Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B2_MEDTR3.825e-4472.79Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B3_MEDTR4.995e-4489.32Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH8.520e-4488.35Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B_CAPAN1.113e-4397.83Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B7_ARATH1.898e-4389.22Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH1.898e-4389.22Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181920 ID=CN181920; Name=CN181920; organism=Citrus sinensis; type=EST; length=648bp
TCATATTTCATTTTCATATTCTAACATAATGAACATGCACATCACCCGGA
TCAGGTCCAAATTTCTAGTACATCCAAACAAACCCTAAAAATCCAACAAA
GATTTAAAAACAAAAAACATAAAACGACTTCATCTAGTAAAATTAAAGGC
CTAAACTACTAACTACACAAATCACATAACACCCGAATCCACCGACCGAT
GCAACAAACTTCCTTCAAGAAGAAGTAAACTTAGTAACAGCTTTGGTACC
CTCAGAAACAGCGTGCTTAGCCAGCTCACCAGGAAGTACAAGTCTCACAG
CGGTCTGAATTTCCCGAGATGTAATCGTCGGCTTCTTATTGTACCTTGCA
AGCCTAGAAGCTTCCTGGGCAAGCTTCTCGAAAATATCGTTGATGAAACT
GTTCATGATTCCCATGGCCTTGCTCGAGATTCCGATATCGGGATGTACCT
GCTTCAGGACTTTGAAGATGTAAATCTTGTAAGTCTCGATACTCTTCTTC
GCGCGCTTCTTCTTCTTGTCGCCAGAGGCGGCTTCTTTGGGAAGCTTCTT
GCCGGCCTTCGGCTTCTTCTCCGCCGGCGCCTTCTCGGCCACCGATGTCT
TCTTCTCCTCCGCTGGCTTTCTTCTCAGCCGGCTTCTTCTCCGCCTTT
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