CN181916

Overview
NameCN181916
Unique NameCN181916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1549 contig Csv1_Contig1549:138..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.068e-70
Identity = 140/179 (78.21%), Postives = 152/179 (84.92%), Query Frame = 3
Query:    9 LKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE 545
            LKE ITAYTGLSPAAFFTV+AL +A+Y V+SG F S + H + RS E + Q EPLPPPVQLGEITEEELK YDGSDSKKPLLMAIK QIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKFMSKYVKVG+I+      DG    ES+EP E
Sbjct:    9 LKETITAYTGLSPAAFFTVLALAFAVYQVVSGFFVSPEVH-RPRSLEVQPQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQK----KDGEGK-ESSEPSE 181          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.199e-67
Identity = 140/208 (67.31%), Postives = 155/208 (74.52%), Query Frame = 3
Query:    9 LKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGS---SDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE---GVVDTPAESKGVV----DTPAET 602
            LKEAI AYTGLSP  FFT +AL +AIY V+SG F S     N HQ+     +E+  P+P PVQ+GEITEEELKQYDGSD +KPLLMAIK QIYDV+QSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEYKFMSKY KVG++K      + AS  E TE  E    V  TP   K VV    D PAET
Sbjct:    9 LKEAIHAYTGLSPVVFFTALALAFAIYQVISGWFASPFDDVNRHQRARSLAQEEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVEQDAHVTTTP--GKTVVDKSDDAPAET 214          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.850e-23
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 3
Query:  195 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 491
            E T E+L QY+G+D  KP+ +AIK +++DV+  + FYG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE KF +KY  VG + S
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.911e-19
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  177 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 515
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT DISGL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  177 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 515
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT D +GL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  165 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 485
            EP P P ++  + T  EL++YDG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   61 EPPPLPRLKPRDFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 170          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   42 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 485
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 169          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   42 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 485
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 169          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  177 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 515
            PPV+L   TEEEL +Y G +  +P+ MA+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELE+L D +   + +KY  VG     +   DG+
Sbjct:   39 PPVRL--FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS 150          
BLAST of CN181916 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  165 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 485
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 170          
The following BLAST results are available for this feature:
BLAST of CN181916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MSBP2_ARATH1.068e-7078.21Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH4.199e-6767.31Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH2.850e-2350.51Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT1.911e-1945.61Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE2.113e-1843.86Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
PGRC1_RAT1.370e-1743.24Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG1.789e-1733.11Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN1.789e-1733.11Membrane-associated progesterone receptor componen... [more]
NENF_BOVIN1.789e-1742.11Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC1_MOUSE3.052e-1742.34Membrane-associated progesterone receptor componen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181916 ID=CN181916; Name=CN181916; organism=Citrus sinensis; type=EST; length=649bp
TGGGAGATCTAAAGGAGGCGATAACAGCGTACACGGGGCTCTCCCCGGCG
GCGTTTTTTACAGTTGTTGCGTTGCTGTGGGCCATATACTATGTTCTGTC
GGGAATGTTTGGTTCGTCCGATAATCATCATCAGCAGAGATCGAGGGAGT
ACGAGGAACAGATGGAGCCTCTGCCACCGCCTGTTCAGCTAGGCGAGATT
ACCGAGGAGGAGCTCAAACAGTACGATGGCTCCGATTCCAAAAAGCCCCT
TCTCATGGCCATCAAGAGCCAGATCTACGATGTCTCTCAGAGCAGGATGT
TTTATGGACCTGGTGGGCCATATGCGTTGTTTGCTGGAAAGGATGCTAGC
AGGGCCCTTGCCAAGATGTCTTTTGAGGAAAAAGATTTAACTGGTGATAT
CTCTGGTCTTGGTCCATTTGAGTTGGAGGCATTGCAGGACTGGGAGTATA
AGTTCATGAGCAAGTATGTTAAGGTTGGATCTATCAAGTCGACAGTTCCA
GTAACAGATGGAGCCTCCTCTGGTGAATCCACTGAGCCTAAAGAAGGAGT
TGTTGATACACCTGCAGAAAGTAAAGGAGTTGTTGATACACCTGCAGAAA
CTAAAGAAGTAGATATCGCTAAGCCTGCTGAATATGGTCCGTCAGAAAC
back to top