CN181912

Overview
NameCN181912
Unique NameCN181912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1160 contig Csv1_Contig1160:86..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181912 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41
Identity = 97/181 (53.59%), Postives = 110/181 (60.77%), Query Frame = 2
Query:  137 ATGPTAGGEGASAAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLA-----YHHQQQQFSXXXXXXXXXXXXXXLHLT--AAQPRPLALPSSSAGGYSREEEDVSNPXXXXXXXXXTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDE 658
            AT    GG G S      IRYRECLKNHAV+IGGHAVDGC EFM +G++GTL++LKCAAC CHRNFHRKET+     A     Y+++  Q                LHLT  AA  RP A         S +EED SNP         T KR RTKFTAEQKEKML FAE+LGWRIQKHD+
Sbjct:   29 ATSSGGGGVGRSKGVGAKIRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAHRVPTYYNRPPQ---------PHQPPGYLHLTSPAAPYRPPAA--------SGDEEDTSNP----SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDD 188          
BLAST of CN181912 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 82/188 (43.62%), Postives = 100/188 (53.19%), Query Frame = 2
Query:  122 TNASKATGPTAGGEGAS-----AAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLAYHHQQQQFSXXXXXXXXXXXXXXLHL----TAAQPRPLALPSSSAGGYSREEEDVSNPXXXXXXXXXTKKRHRTKFTAEQKEKMLGFAEQLGWRIQKHDE 658
            T + + TG T+ G G              R+RECLKN AV+IGGHAVDGCGEFM AG EGT+++LKCAAC CHRNFHRKE        +HH   Q                +      + A P  LALP        RE  +              +KRHRTKFTAEQKE+ML  AE++GWRIQ+ D+
Sbjct:   45 TESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELP-----YFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPP-----QRERSEDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDD 222          
The following BLAST results are available for this feature:
BLAST of CN181912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH6.984e-4153.59ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH4.848e-3443.62ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181912 ID=CN181912; Name=CN181912; organism=Citrus sinensis; type=EST; length=661bp
GAAGAAAACAAACAAAATTAAAGAGATTGAAGATTATTAATTAAGAGAGG
AGGAGATGGAATTTGAGGAGCACGAAGAGCAAGAGGTAGAAGAAATGGGG
GCAGCGGAGTACGAGTCAATGACTAACGCGTCAAAGGCAACGGGCCCCAC
CGCAGGAGGAGAAGGTGCATCGGCGGCGGCCAGAAAATCCATCAGGTACC
GGGAGTGTCTTAAGAATCACGCTGTCAGCATCGGTGGACACGCGGTTGAC
GGATGCGGGGAGTTCATGGCAGCTGGCGACGAAGGCACCCTCGAATCCCT
CAAATGCGCCGCGTGTAACTGCCACAGGAATTTCCACCGTAAGGAAACTG
ACGGTGCCTCGCCGTTGGCCTACCATCACCAGCAGCAGCAATTCTCGCCT
TACTATCGGGGGCCTCCGCCTCCGGCTCCAGCTGGGTACTTGCACTTGAC
AGCTGCCCAGCCGAGGCCGTTAGCGCTGCCGTCGTCGTCAGCCGGTGGCT
ATAGTAGAGAAGAGGAAGATGTGTCGAATCCAAGCAGCAGCGGCGGGGGA
AGTGGCGGAACGAAGAAAAGGCACAGAACGAAGTTCACAGCTGAGCAAAA
GGAGAAGATGCTAGGGTTTGCTGAGCAGCTGGGCTGGAGAATCCAGAAGC
ACGATGAGGCT
back to top