CN181910

Overview
NameCN181910
Unique NameCN181910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11936 contig Csv1_Contig11936:249..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181910 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.912e-45
Identity = 98/142 (69.01%), Postives = 105/142 (73.94%), Query Frame = -1 
Query:  186 KLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 611
            KLD IYG FDK SEKK GYVLPRSKMVNADLARIINSDEVQSVV PI+   KRA                 PYAKTARRMSLLAEA+RV           KPI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  267 KLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
[Close]
BLAST of CN181910 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.642e-44
Identity = 93/142 (65.49%), Postives = 105/142 (73.94%), Query Frame = -1 
Query:  186 KLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 611
            KL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDE+QSVV PIK + KRA                 PYAKTA+RMSLLAEAQRV           K +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  265 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
[Close]
BLAST of CN181910 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.224e-43
Identity = 95/142 (66.90%), Postives = 103/142 (72.54%), Query Frame = -1 
Query:  186 KLDEIYGKFDKGSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 611
            KL+ IYG F+K SEKKKGYVLPR+KMVNADLARIINSDEVQSVV PIK   KRA                 PYAKTA+RMSLLAEA RV           K +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  266 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
The following BLAST results are available for this feature:
BLAST of CN181910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL4_PRUAR6.912e-4569.0160S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH7.642e-4465.4960S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH2.224e-4366.9060S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181910 ID=CN181910; Name=CN181910; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTGGGAGGAAAAACAGACGTCGAAACATTGACCAT
TCAGCTTATCTTCCTTCCAAACATTCTCATCCATGACTCAAAACAGCAAA
AGATACTAAAATTCAACAGCAAATCCACAAAGATTAACAAGATATTGTCT
CAAAAATCAAAATTTAAAAACCAACAATCAGATTACTGTGAGACACCAAG
CCACTTCGAGAAGTTCTCGAACTCGGTATAATCACTGTCTGAGATCATAG
TCTGGTACCATGCCTTGCCGGCAGACTTGATTGCAGCTGCCTCCTCCTTA
GTGATGGGCTTCCTCTTCTTGTCGAGCTTCTCCTTCTTAGCTTTAACCCG
TTGTGCCTCAGCCAAAAGTGACATCCGCCGAGCAGTCTTAGCATATGGGT
TCAACCTCAACAGAGTATTCAAGTTCTTGAGAGGATTCTTCTTCATCGGA
GCCCTCTTAACCTCCGTCTTAATCGGCCTGACAACAGACTGCACCTCATC
CGAGTTAATAATCCTAGCCAAATCAGCGTTGACCATCTTGGAACGAGGCA
GCACATAACCCTTCTTCTTCTCGGAACCCTTATCAAACTTACCATAAATC
TCATCAAGCTT
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