CN181908

Overview
NameCN181908
Unique NameCN181908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10652 contig Csv1_Contig10652:50..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181908 vs. ExPASy Swiss-Prot
Match: DSCR3_MOUSE (Down syndrome critical region protein 3 homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = -1
Query:  268 STQCSLLDPIAGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRT 654
            ST C++  P+ GEL VE S   I SI++ L+R+E+    E    + + IQ  Q+ADGD+CRN+++P+Y++ PRL TCPT+    F VEF+V+VV+   ++                L  E  PL+L RT
Sbjct:  184 STNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD---------------HLITENFPLKLCRT 297          
BLAST of CN181908 vs. ExPASy Swiss-Prot
Match: DSCR3_PONAB (Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = -1
Query:  370 STQCSLLDPIAGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 654
            ST C +  P+ GEL VE+S   I S+++ L+R+E+    E    + + IQ  Q+ADGDVCR +++PIY++ PRL TCPT+    F VEF+V++V+
Sbjct:  184 STNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278          
BLAST of CN181908 vs. ExPASy Swiss-Prot
Match: DSCR3_HUMAN (Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = -1
Query:  370 STQCSLLDPIAGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 654
            ST C +  P+ GEL VE+S   I S+++ L+R+E+    E    + + IQ  Q+ADGDVCR +++PIY++ PRL TCPT+    F VEF+V++V+
Sbjct:  184 STNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278          
BLAST of CN181908 vs. ExPASy Swiss-Prot
Match: DSCR3_DICDI (Down syndrome critical region protein 3 homolog OS=Dictyostelium discoideum GN=DDB_G0292212 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 35/103 (33.98%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  370 FKVTGKM-STQCSLLDPIAGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 675
            FK++G + S  C++ +   G + +E++   I S+++ L+R+E+    +    E + IQ  Q+ADGD+ RN  +P+Y++ PRL TC +     F +EF+V++VI
Sbjct:  184 FKISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCADGYAREVTEIQNIQIADGDIWRNFKIPLYMVFPRLFTCISTAGKTFKIEFEVNLVI 286          
The following BLAST results are available for this feature:
BLAST of CN181908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DSCR3_MOUSE2.467e-2038.76Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_PONAB3.562e-1944.21Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_HUMAN3.562e-1944.21Down syndrome critical region protein 3 OS=Homo sa... [more]
DSCR3_DICDI7.686e-1433.98Down syndrome critical region protein 3 homolog OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181908 ID=CN181908; Name=CN181908; organism=Citrus sinensis; type=EST; length=678bp
GTAAATTTGTAGCCCATATCCATTAACATCACGGTATTCTGATCTATACT
TTGAATCTGACATGATCAATAAAGTTTACACATTGATTTGAAAGAACACG
GCAGTTATCACGACAAATTGCATCATTTGTACCTGTACCCAAGGGTACAT
CCCCACTATTCAGTGGTGGAATTCAGCCTATTCTGATATGAGTGTTTGAC
CCGCAATCTCAACAGAATTCACGGATGCTCTTGAACAGTTGTTGCTTTGA
ACAGTTATATATCAGTTTGTTCGAACAAGTTCCAGCGGTAGAGTTTCCAT
TGCCAGCCAGAGTCTTGGAGTTGTTGGATCAGACTTTTTATGCAATTTGG
AAAGCTCTGACCGAAAGCTGATGACTACGGACACTTTGAACTCAACTGAA
AATGGACCGGCCAAGACAGTTGGACAAGTCAAAAGACGGGGGAGTATGAC
ATATATAGGCAGAGTCATGTTGCGACAGACATCTCCATCTGCTACCTGCG
TTGTCTGAATCAAAGAGGTTTCAGATATAATCTTTTCTCCTAAAAGAATC
GACTCCATGCGGAGGAGGTGAATGTCAATGGAGTGAATAGGAACAGAAGA
TGCTTCAACCGTTAGCTCTCCAGCGATGGGATCCAACAGGGAACATTGAG
TGGACATTTTTCCTGTCACCTTAAAACC
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