CN181907

Overview
NameCN181907
Unique NameCN181907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2224 contig Csv1_Contig2224:574..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.636e-40
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = -3
Query:  198 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVW-----XXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKEC 536
            KN+ES G LFPKN+PMR+YSS WNADDWA RGGL+KTDW++APFTA YR F   ACVW                   W SQELD+  Q+R++WVQ+N MIYNYC D+KRFPQGLPKEC
Sbjct:  164 KNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGKSSCPNASKQGTTTGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 281          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.598e-39
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = -3
Query:  198 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACV----WXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKEC 536
            KN+ES G LFPKNQPMR+YSS WNA++WA RGGL+KTDW++APFTA YR FN  ACV                   W SQELD+ GQE+++WVQ N MIYNYC D+KRFPQGLP+EC
Sbjct:  167 KNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACVVINGQSSCPNVSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 283          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.875e-35
Identity = 65/114 (57.02%), Postives = 81/114 (71.05%), Query Frame = -3
Query:  195 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVWXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKECA 536
            KN E+ GV FPK+QPMR+Y+S W A+ WA RGGL KTDW++APFTAFYRN+N +ACVW            + WF+Q LD  G+ R+KW Q+  M+YNYC D KRFPQG P EC+
Sbjct:  171 KNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDACVW--SNGKSSCSANSSWFTQVLDFKGKNRVKWAQRKYMVYNYCTDKKRFPQGAPPECS 282          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.755e-35
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = -3
Query:  198 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVWXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKEC 536
            KN ES GVLFPKN+PMR+Y+S WNADDWA RGGL+KTDW++APF A YRN   ++               + W++QE+D+  Q RLKWVQKN MIYNYC D +RFPQG PKEC
Sbjct:  165 KNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNIKIDS------------KPNSNWYTQEMDSTSQARLKWVQKNYMIYNYCTDHRRFPQGAPKEC 265          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.179e-34
Identity = 65/113 (57.52%), Postives = 80/113 (70.80%), Query Frame = -3
Query:  198 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVWXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKEC 536
            KNL+  G+ +PK QPMR+YSS WNAD WA RGGL+KTDW++APFTA YRNF A+ACV               WFSQ LD   +++++ VQ+  MIYNYC D+KRFPQG PKEC
Sbjct:  171 KNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACV-SSGGRSSCPAGSPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKEC 282          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.422e-34
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = -3
Query:  198 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVWXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKEC 536
            KN E+ GV FP  QPMR+Y+S W A+ WA RGGL KTDW++APFTAFYRN+N + CVW            +PWF+Q+LD+ GQ R+K VQ   MIYNYC D +RFP+G+P EC
Sbjct:  171 KNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDGCVW--ANGKSSCSANSPWFTQKLDSNGQTRMKGVQSKYMIYNYCTDKRRFPRGVPAEC 281          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.577e-33
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = -3
Query:  195 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVWXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKECA 536
            KN ES GV FP  QPMR+Y+S W A+ WA RGGL KTDW++APFTAFYRN+N   CVW            + WF+Q+LD+ GQ R+K VQ   M+YNYC D +RFP+G+P EC+
Sbjct:  171 KNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVEGCVW--ANGKSSCPANSSWFTQQLDSNGQTRMKGVQSKYMVYNYCNDKRRFPRGVPVECS 282          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.060e-33
Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = -3
Query:  195 NLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVWXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKECA 533
            N ES GV FP  QPMR+Y+S W A+ WA RGGL KTDW++APFTA+YRN+N   CVW            + WF+Q+LD+ GQ R+K VQ   M+YNYC D KRFP+G+P EC+
Sbjct:  167 NAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAYYRNYNVEGCVW--VNGKSVCPANSQWFTQKLDSNGQTRMKGVQSKYMVYNYCSDKKRFPRGVPPECS 277          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.590e-33
Identity = 68/113 (60.18%), Postives = 76/113 (67.26%), Query Frame = -3
Query:  198 KNLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACVWXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKEC 536
            KN E  GV FPKNQPMRIYSS WNADDWA RGGL+KTDW++APFTA+YRNF A                   + + ELD   + RL+WVQK  MIYNYC D KRFPQGLP EC
Sbjct:  173 KNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKA----IEFSSKSSISNSGAEYEANELDAYSRRRLRWVQKYFMIYNYCSDLKRFPQGLPAEC 281          
BLAST of CN181907 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.335e-32
Identity = 66/118 (55.93%), Postives = 77/118 (65.25%), Query Frame = -3
Query:  198 NLESNGVLFPKNQPMRIYSSFWNADDWAPRGGLIKTDWTQAPFTAFYRNFNANACV------WXXXXXXXXXXXXNPWFSQELDTPGQERLKWVQKNSMIYNYCKDSKRFPQGLPKEC 533
            N E  GV FPKNQPM+IYSS WNADDWA RGGL+KTDW++APFTA+YR FNA AC       +                + EL+  G+ RL+WVQK  MIY+YC D KRFPQG P EC
Sbjct:  169 NAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVSSGSSFCDPKFKSSFTNGESQVANELNAYGRRRLRWVQKYFMIYDYCSDLKRFPQGFPPEC 286          
The following BLAST results are available for this feature:
BLAST of CN181907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
XTH22_ARATH8.636e-4061.86Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH23_ARATH5.598e-3961.54Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH2.875e-3557.02Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH24_ARATH3.755e-3559.29Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH3.179e-3457.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH5.422e-3456.64Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH1.577e-3355.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH19_ARATH2.060e-3354.87Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN4.590e-3360.18Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH16_ARATH1.335e-3255.93Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181907 ID=CN181907; Name=CN181907; organism=Citrus sinensis; type=EST; length=538bp
TTTTTTTTTTTTTTTTTAACAAAAGTAACAATATTTTATTACACGTAGCA
CTTATAGTACAAAAAAGAATGAACCATACATTTTATTTGTCACTAAACAT
TAGTACACAGAATAAAAGAACCAAAACATCAAAACTGAAGATTAAAAAAG
CTATAAACAAAGACATATGGCAAATGGATCAGTTATATATTGAATGCACA
TTCTTTTGGGAGCCCTTGGGGAAATCGTTTTGAGTCCTTGCAATAATTAT
ATATCATGGAATTCTTCTGCACCCATTTGAGTCTCTCTTGGCCAGGGGTA
TCAAGTTCTTGCGAGAACCATGGATTATTATTTTTTGAGTTGCAAGAGGA
TTTTCCATTAGACCAAACGCAAGCATTGGCATTGAAGTTTCTGTAAAAAG
CAGTGAAGGGAGCTTGGGTCCAGTCAGTTTTGATAAGGCCACCTCTCGGG
GCCCAGTCATCGGCGTTCCAGAAACTCGAGTAAATCCTCATCGGCTGGTT
TTTGGGAAAAAGTACGCCGTTTGATTCCAAGTTCTTGA
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