CN188785

Overview
NameCN188785
Unique NameCN188785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188785_ssr518 microsatellite CN188785_ssr518:518..547. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2145 contig Csv1_Contig2145:98..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188785 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = -3 
Query:  195 NSPLIASPAEDLKAKAA--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 464
            NSPL       L  K A    C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96
The following BLAST results are available for this feature:
BLAST of CN188785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN1.772e-1853.26Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188785 ID=CN188785; Name=CN188785; organism=Citrus sinensis; type=EST; length=595bp
CCTTTTTTCGCCAAGATAAATGGCAAACTTATTGCACGAGAATTCCATCG
GCCCTTTTAAGTGGGGAAAAAAATTGTCTCAAATACATTTAAACCTTTTC
ATATGAACCTGTGTGCTATGCTCACTACGCATATCATGGCATCTTCATGG
TGAATTGCTTCAGGTACAGAATCTCAAGTTGGTTTGCCATACTGGGCATT
CCTCCTTGCACACTCCAAAATAGTCTTGTCAACAGTGATGAAGTAAGAAG
CAATTGACACTGCGGATATGATGAGTGCCTGACCAGTATAATTCAGGTTT
GCCTTTGCCCAAGGAATTTTTCGAACTGCAACCAACGTCGGCACAGCGGT
GACAACACACATTACGGCAGCGGCCTTTAATCCAGCTCGAACGCCTTCTT
GAACGCAGTCGTTGGCGGCCTTAGCCTTTAGATCTTCAGCAGGAGAGGCA
ATCAGTGGCGAGTTATTTGACCTTCTGGATGCAAAAATATCTCTAACTTC
CGACGGAAATCCCATTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTAAT
TAGAATAAGAAACTCAAAAATGGATGGCGGATTAAGATTTGACCT
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