CN181905

Overview
NameCN181905
Unique NameCN181905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181905_ssr1 microsatellite CN181905_ssr1:1..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12479 contig Csv1_Contig12479:198..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181905 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  159 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEKNIAEIAGTISFMLIPVLFAFIIS 572
            ESK LW ++  +I     ++ L+ V+  F GH+G+ QLA  S+    +   A GI+LGMASA++T+CGQA+GA+QY  +GI  QR+ ++    A                +GQ   IA      +  +IP ++AF ++
Sbjct:   51 ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALA 188          
BLAST of CN181905 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 36/136 (26.47%), Postives = 67/136 (49.26%), Query Frame = 3
Query:  147 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEKNIAEIAGTISFMLIPVL 554
            ++W E+++L  +AAPA  ++   F +++VS  F GH+G  +L A SL  T++      +  G+A A +TL  Q FG     ++GI LQR  ++L +                +   Q+  ++++      + +P L
Sbjct:   44 EVWQEAQQLLALAAPAFLSQLMIFLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPAL 179          
BLAST of CN181905 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 38/132 (28.79%), Postives = 64/132 (48.48%), Query Frame = 3
Query:  159 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILLGMASALETLCGQAFGAKQYHMLGIYLQRSWIVLTICAXXXXXXXXXXXXXXVALGQEKNIAEIAGTISFMLIPVL 554
            E+  L  +A P    +   F +++VS  F GH+G  +L A +L  +V+      +  G+ASA +TL  Q+FG K    +G+ LQR  ++L +C               + L Q+ ++A +A     + IP L
Sbjct:   43 EAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPAL 174          
The following BLAST results are available for this feature:
BLAST of CN181905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TT12_ARATH1.562e-1634.06Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR1.513e-1126.47Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_MOUSE3.370e-1128.79Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181905 ID=CN181905; Name=CN181905; organism=Citrus sinensis; type=EST; length=579bp
TCTCTCTCTCTCTCTCTCCTGCTAGCTCTCGGTGGAGTGAAAGAAAAGCT
TTTTTTCTGGAGGTGAGAATGGTGGGAGAGATCAAAGAGAAGCTATTAGG
AAACACGGAGGAAAATGATGTTGATGGGCAAGTGAAATTCAGGCAAAAGC
TGTGGGTGGAATCCAAAAAGTTATGGATTGTAGCAGCTCCCGCTATTTTC
ACAAGATTTTCTTCATTTGGGCTCAACGTAGTTAGTCAGGCATTTATTGG
GCACATTGGCGCGACCCAACTAGCTGCCTACTCACTTGTGTTTACTGTTC
TCTTGAGGTTTGCAAATGGCATCCTGTTGGGCATGGCTAGTGCATTAGAG
ACGCTCTGTGGGCAAGCTTTTGGGGCGAAACAATACCACATGCTAGGAAT
ATATCTTCAAAGATCATGGATAGTCTTAACCATTTGTGCTATCCTTCTCT
TACCTCTGTTCTTCTTCACTACACCAATTTTGGTGGCTTTGGGCCAAGAA
AAAAATATTGCTGAAATTGCAGGAACTATTTCCTTCATGCTAATCCCTGT
GTTGTTCGCCTTCATCATATCCTTTACCT
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