CN181904

Overview
NameCN181904
Unique NameCN181904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11469 contig Csv1_Contig11469:20..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181904 vs. ExPASy Swiss-Prot
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 66/168 (39.29%), Postives = 88/168 (52.38%), Query Frame = 2
Query:  200 FEIRRYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 697
            +EIR Y  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP      + I+        VR F GF S     E+   L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct:   38 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 195          
BLAST of CN181904 vs. ExPASy Swiss-Prot
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  200 FEIRRYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 697
            +EIR Y  + W+ST  ++ +    A +TGF +L  YIQGKNE E  I++TAPV + V P   PF ES+ T+S Y+P   Q +PP P++  + I+        VR F GF S     E+   L A++         EK         +  A Y+SPF+  +R NE+WL+
Sbjct:   38 YEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLLTL-ANILREEGKVFNEK--------VFYTAGYSSPFQLLDRNNEVWLI 195          
The following BLAST results are available for this feature:
BLAST of CN181904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HEBP2_HUMAN1.743e-2239.29Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE... [more]
HEBP2_MOUSE3.634e-2036.31Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001K11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181904 ID=CN181904; Name=CN181904; organism=Citrus sinensis; type=EST; length=729bp
GAGGCCCAGAAGTCTCTCCACTAAAAAAACAAAAATGGCTGCAGGCTTGA
GCATGTTAAAGTTTTCAGTTCTTCTGGGCCTACTCTCAAATCTGAACTTG
GGTTTATGGCCTGAATCTTCAAAGGGGTTGAAAATATTTCCACCAACATG
CAACAGAATTGAGTGTCCAAGCTTTGAGACCGTTCATGTTGGCAATGGCT
TTGAAATTCGTCGCTATAATTCGTCCATGTGGATGTCTACTTCCCCTATT
CAAGATATCTCTCTAGTTCAAGCTACCAGAACTGGCTTTCTCCAGCTATT
TGATTACATTCAAGGAAAGAACGAGTATGAGCAAACAATAGAGATGACAG
CTCCAGTAATCACTGAAGTTTTACCAAGTGATGGACCCTTCTGTGAATCT
TCATTCACCGTTAGCTTTTACGTCCCAAAGGTGAACCAAGCCAACCCACC
TCCAGCAAAAGGCCTCCATATCCAACAATGGAAAGCAACGTACGCAGCTG
TGAGACAGTTCAGCGGGTTTGTATCAGACTCTAACATTGGTGAAGAAGCG
GCTGCATTGCAAGCCAGTCTTGCAGGCACTAACTGGGCTGCAGCCATTGA
GAAAAGACGTGCAGAAGACCCAACTTCAAGTTACATTGTTGCACAGTATA
ACTCTCCCTTTGAATTTTACAACAGAGTGAATGAGATATGGCTTTTGTTT
GATTTGGAAGAAGGGTTTGCAATTTGAGT
back to top