CN181903

Overview
NameCN181903
Unique NameCN181903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11469 contig Csv1_Contig11469:268..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181903 vs. ExPASy Swiss-Prot
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 58/144 (40.28%), Postives = 74/144 (51.39%), Query Frame = -3 
Query:  165 ATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPP--AKGLHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 590
            A +TGF +L  YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP      + I+        VR F GF S     E+   L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct:   61 AIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 195
[Close]
BLAST of CN181903 vs. ExPASy Swiss-Prot
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = -3 
Query:  165 ATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHIQQWKATYAAVRQFSGFVSDSNIGEEAAALQASLAGTNWAAAIEKRRAEDPTSSYIVAQYNSPFEFYNRVNEIWLL 590
            A +TGF +L  YIQGKNE E  I++TAPV + V P   PF ES+ T+S Y+P   Q +PP P++  + I+        VR F GF S     E+   L A++         EK         +  A Y+SPF+  +R NE+WL+
Sbjct:   61 AIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLLTL-ANILREEGKVFNEK--------VFYTAGYSSPFQLLDRNNEVWLI 195
The following BLAST results are available for this feature:
BLAST of CN181903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HEBP2_HUMAN2.476e-1840.28Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE... [more]
HEBP2_MOUSE1.774e-1637.50Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181903 ID=CN181903; Name=CN181903; organism=Citrus sinensis; type=EST; length=613bp
TTTATTCAATAATGGATCCCTCTTAACATTTCATATGACAATGCAAAACG
ATTATTACATTAACCGTATAAAGCAAAATCCATCTACTTGATTTCTCTCC
ACTTAGTTCTTCATTACAAACCAGATTTCCAAACTCAAATTGCAAACCCT
TCTTCCAAATCAAACAAAAGCCATATCTCATTCACTCTGTTGTAAAATTC
AAAGGGAGAGTTATACTGTGCAACAATGTAACTTGAAGTTGGGTCTTCTG
CACGTCTTTTCTCAATGGCTGCAGCCCAGTTAGTGCCTGCAAGACTGGCT
TGCAATGCAGCCGCTTCTTCACCAATGTTAGAGTCTGATACAAACCCGCT
GAACTGTCTCACAGCTGCGTACGTTGCTTTCCATTGTTGGATATGGAGGC
CTTTTGCTGGAGGTGGGTTGGCTTGGTTCACCTTTGGGACGTAAAAGCTA
ACGGTGAATGAAGATTCACAGAAGGGTCCATCACTTGGTAAAACTTCAGT
GATTACTGGAGCTGTCATCTCTATTGTTTGCTCATACTCGTTCTTTCCTT
GAATGTAATCAAATAGCTGGAGAAAGCCAGTTCTGGTAGCTTGAACTAGA
GAGATATCTTGAA
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