CN181898

Overview
NameCN181898
Unique NameCN181898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12915 contig Csv1_Contig12915:817..1257. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181898 vs. ExPASy Swiss-Prot
Match: PUP1_ARATH (Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.016e-27
Identity = 59/108 (54.63%), Postives = 76/108 (70.37%), Query Frame = -1
Query:  121 EARAYTLGEGK-YYAVVVASALIWQCFFLGAIGVIYCGXXXXXXXXXXXXLPVTEILAVIFYKEKFQAEKGVSLALSLWGFASYFYGEIKNNKKMKKREQLPETEMPI 441
            EAR + +G    YYA++V + +IWQ FFLGAIG+++C             LPVTE+ AV+ ++EKFQAEKGVSL LSLWGF SYFYGE K+ KK+  + Q PETE+PI
Sbjct:  241 EAREFKIGGSVFYYALIVITGIIWQGFFLGAIGIVFCASSLASGVLISVLLPVTEVFAVVCFREKFQAEKGVSLLLSLWGFVSYFYGEFKSGKKVVDKPQPPETELPI 348          
BLAST of CN181898 vs. ExPASy Swiss-Prot
Match: PUP3_ARATH (Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.124e-26
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  130 EARAYTLGEGKYYAVVVASALIWQCFFLGAIGVIYCGXXXXXXXXXXXXLPVTEILAVIFYKEKFQAEKGVSLALSLWGFASYFYGEIKN--NKKMKKREQLPETE 441
            EAR + LGE  +Y V V SA+IWQ FFLGAIG+I+              LP+TE+LAVIFY EKFQAEKG+SLALSLWGF SYFYGEIK+  +K+  ++E+  ETE
Sbjct:  235 EAREFKLGEALFYVVAVFSAIIWQGFFLGAIGLIFSTSSLVSGIMISVLLPITEVLAVIFYHEKFQAEKGLSLALSLWGFVSYFYGEIKSGEDKRRIQQEESQETE 340          
BLAST of CN181898 vs. ExPASy Swiss-Prot
Match: PUP2_ARATH (Purine permease 2 OS=Arabidopsis thaliana GN=PUP2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.614e-25
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = -1
Query:  130 EARAYTLGEGKYYAVVVASALIWQCFFLGAIGVIYCGXXXXXXXXXXXXLPVTEILAVIFYKEKFQAEKGVSLALSLWGFASYFYGEIKNNKKMKKRE----QLPETE 441
            EAR + LGE  YY V+V +A+IWQ FF+GAIG+I+C             LPVT ILAVI ++EKFQA KGV+LALSLWG  SYFYG++K+ +K K ++    QLP T+
Sbjct:  248 EARDFKLGESLYYVVIVFTAIIWQAFFVGAIGLIFCASSLVSGIMVSALLPVTVILAVICFQEKFQAGKGVALALSLWGSVSYFYGQVKSEEKTKAQDTQLSQLPVTD 355          
BLAST of CN181898 vs. ExPASy Swiss-Prot
Match: PUP9_ARATH (Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.509e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = -1
Query:  124 EARAYTLGEGKYYAVVVASALIWQCFFLGAIGVIYCGXXXXXXXXXXXXLPVTEILAVIFYKEKFQAEKGVSLALSLWGFASYFYGEIKNNKKMKKREQLPETEMP 441
            E   Y LG+  Y   +V +A+ WQ F +G  G+I+              LPV  ILAVI + +K    K +S+ L++WGF SY Y +  +   +KK  ++P TE P
Sbjct:  226 EMENYKLGKVSYVMNLVWTAVTWQVFSIGCTGLIFELSSLFSNAISALGLPVVPILAVIIFHDKMNGLKVISMILAIWGFVSYVYQQYLDETNLKKSNEIPTTESP 331          
BLAST of CN181898 vs. ExPASy Swiss-Prot
Match: PUP10_ARATH (Probable purine permease 10 OS=Arabidopsis thaliana GN=PUP10 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = -1
Query:  118 YTLGEGKYYAVVVASALIWQCFFLGAIGVIYCGXXXXXXXXXXXXLPVTEILAVIFYKEKFQAEKGVSLALSLWGFASYFYGEIKNNKKMKKREQLPETEMPIP 429
            Y  G+  Y   +V +A+ WQ F +G  G+I+              LPV  ILAVI + +K    K +S+ L++WGF SY Y +  ++K +KK  ++  TE P P
Sbjct:  276 YKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSSLFSNAISVLGLPVVPILAVIIFHDKMNGLKVISMILAIWGFTSYVYQQYLDDKNLKKNHEITTTESPDP 379          
BLAST of CN181898 vs. ExPASy Swiss-Prot
Match: PUP6_ARATH (Probable purine permease 6 OS=Arabidopsis thaliana GN=PUP6 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 30/104 (28.85%), Postives = 58/104 (55.77%), Query Frame = -1
Query:  130 EARAYTLGEGKYYAVVVASALIWQCFFLGAIGVIYCGXXXXXXXXXXXXLPVTEILAVIFYKEKFQAEKGVSLALSLWGFASYFYGEIKNNKKMKKREQLPETE 441
            E   + LG+  Y  + + S + WQ   +G++G+I               LPV  +LAV+F++++    K V++ L++WGF SY Y    N++K ++ ++LP+++
Sbjct:  269 EMEEFQLGKSSYILINIGSTISWQACLIGSVGLIIEVSSLFSNVISTLCLPVVPVLAVVFFRDEMSGIKLVAMFLAIWGFVSYGYQHYVNDRKPEEDQELPQSK 372          
BLAST of CN181898 vs. ExPASy Swiss-Prot
Match: PUP21_ARATH (Probable purine permease 21 OS=Arabidopsis thaliana GN=PUP21 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 32/104 (30.77%), Postives = 54/104 (51.92%), Query Frame = -1
Query:  130 EARAYTLGEGKYYAVVVASALIWQCFFLGAIGVIYCGXXXXXXXXXXXXLPVTEILAVIFYKEKFQAEKGVSLALSLWGFASYFYGEIKNNKKMKKREQLPETE 441
            E R Y LG+  Y   + ++A+ WQ + +G +G+I+              LP+  ++AVI + +K  A K  S+ L++WGF S+ Y    + KK+K  +  P  E
Sbjct:  269 EMRNYKLGKVSYILTLASAAIFWQVYTVGCVGLIFESSSVFSNSITAVGLPIVPVVAVIVFHDKMDASKIFSIILAIWGFLSFVYQHYLDEKKLKTCQTKPVEE 372          
The following BLAST results are available for this feature:
BLAST of CN181898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PUP1_ARATH1.016e-2754.63Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 ... [more]
PUP3_ARATH1.124e-2658.49Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 ... [more]
PUP2_ARATH3.614e-2553.70Purine permease 2 OS=Arabidopsis thaliana GN=PUP2 ... [more]
PUP9_ARATH3.509e-1234.91Probable purine permease 9 OS=Arabidopsis thaliana... [more]
PUP10_ARATH1.333e-1134.62Probable purine permease 10 OS=Arabidopsis thalian... [more]
PUP6_ARATH6.617e-1128.85Probable purine permease 6 OS=Arabidopsis thaliana... [more]
PUP21_ARATH8.643e-1130.77Probable purine permease 21 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181898 ID=CN181898; Name=CN181898; organism=Citrus sinensis; type=EST; length=441bp
CTTGAACAAGTCGAGATTGAAATATAGTAATCATAAATAATTCATATCGA
AATAAAACTTACTATGGTAGCTAGCCAATTAACGGCATTCCAATGGTTAA
ACTAGTTATCATGGATTAGGAATTGGCATTTCTGTTTCTGGAAGTTGCTC
CCGCTTCTTCATCTTCTTATTGTTTTTAATCTCACCATAGAAATACGAAG
CAAATCCCCAAAGCGAAAGTGCAAGAGAGACTCCCTTTTCAGCTTGAAAT
TTTTCTTTGTAGAAAATGACTGCTAGAATCTCGGTAACTGGTAGCAGAAC
TGCGATTATGATTGCGGAGAGCAAAGACGAGCCACAGTAAATGACTCCAA
TAGCCCCTAAGAAGAAGCACTGCCAAATTAATGCACTCGCCACCACCACC
GCATAGTACTTGCCTTCGCCTAGCGTGTACGCTCTTGCTTC
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