CN181896

Overview
NameCN181896
Unique NameCN181896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181896 vs. ExPASy Swiss-Prot
Match: MIOX4_ARATH (Inositol oxygenase 4 OS=Arabidopsis thaliana GN=MIOX4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.192e-22
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    5 FKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 169
            + HLMNEED ENLKWL +FNKYDLYSKSKV VDVEKVKPYY+SLI+KYFPE LRW
Sbjct:  263 YTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVDVEKVKPYYMSLIKKYFPENLRW 317          
BLAST of CN181896 vs. ExPASy Swiss-Prot
Match: MIOX_ORYSJ (Probable inositol oxygenase OS=Oryza sativa subsp. japonica GN=Os06g0561000 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.288e-22
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    5 FKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 169
            + HLMN+ED ENLKWL++FNKYDLYSKS  R+DVEKVKPYY+SLIEKYFP KLRW
Sbjct:  254 YMHLMNDEDKENLKWLRVFNKYDLYSKSNERIDVEKVKPYYMSLIEKYFPAKLRW 308          
BLAST of CN181896 vs. ExPASy Swiss-Prot
Match: MIOX5_ARATH (Inositol oxygenase 5 OS=Arabidopsis thaliana GN=MIOX5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.213e-21
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    5 FKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 169
            + HLMNEED ENLKWL +FNKYDLYSKSKV V+VEKVKPYY+SLI+KYFPE LRW
Sbjct:  260 YTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYYMSLIKKYFPENLRW 314          
BLAST of CN181896 vs. ExPASy Swiss-Prot
Match: MIOX1_ARATH (Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MIOX1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.584e-21
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    5 FKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 169
            +KHLMN ED EN+KWLK+FNKYDLYSKSKVRV+VE+VKPYYLSL  KYFP KL+W
Sbjct:  257 YKHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311          
BLAST of CN181896 vs. ExPASy Swiss-Prot
Match: MIOX2_ARATH (Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    5 FKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 169
            + HLMN+ED ++LKWL +FNKYDLYSKSKV VDVE+VKPYY+SLI KYFP KL+W
Sbjct:  263 YTHLMNDEDRDDLKWLHVFNKYDLYSKSKVLVDVEQVKPYYISLINKYFPAKLKW 317          
BLAST of CN181896 vs. ExPASy Swiss-Prot
Match: MIOX_DICDI (Inositol oxygenase OS=Dictyostelium discoideum GN=miox PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.200e-14
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 2
Query:    5 FKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 169
            + HL NEED + L W+K FNK+DLYSK    VDVE +KPYY SLI KYFP +L W
Sbjct:  238 YTHLTNEEDEKMLNWVKEFNKFDLYSKDSEPVDVESLKPYYQSLISKYFPNELHW 292          
BLAST of CN181896 vs. ExPASy Swiss-Prot
Match: MIOX_DANRE (Inositol oxygenase OS=Danio rerio GN=miox PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.911e-12
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2
Query:    5 FKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 169
            + HL NE+D + L W+K FNK+DLY+KS    DVE++KPYY SLI+KY P  L+W
Sbjct:  224 YMHLCNEKDQQMLPWVKEFNKFDLYTKSTELPDVERLKPYYQSLIDKYCPGVLQW 278          
The following BLAST results are available for this feature:
BLAST of CN181896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MIOX4_ARATH3.192e-2283.64Inositol oxygenase 4 OS=Arabidopsis thaliana GN=MI... [more]
MIOX_ORYSJ9.288e-2280.00Probable inositol oxygenase OS=Oryza sativa subsp.... [more]
MIOX5_ARATH1.213e-2181.82Inositol oxygenase 5 OS=Arabidopsis thaliana GN=MI... [more]
MIOX1_ARATH1.584e-2180.00Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MI... [more]
MIOX2_ARATH1.135e-1974.55Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MI... [more]
MIOX_DICDI3.200e-1461.82Inositol oxygenase OS=Dictyostelium discoideum GN=... [more]
MIOX_DANRE3.911e-1256.36Inositol oxygenase OS=Danio rerio GN=miox PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181896 ID=CN181896; Name=CN181896; organism=Citrus sinensis; type=EST; length=348bp
TTGCTTTAAGCACTTGATGAATGAGGAAGATATTGAGAATCTGAAGTGGC
TTAAAATATTCAACAAGTATGACCTCTACAGCAAGAGCAAAGTTCGAGTT
GATGTCGAGAAAGTCAAGCCATATTATCTCAGTCTCATTGAAAAGTACTT
TCCGGAAAAGCTGAGATGGTGAAATTTGGGGCTCGAAAACAGCTTGATGT
TCAACAGAATGCAGCAAGCAATATTGCATAGATGACTATCTCTATTTTGG
GGCAGGGTTGGATTAGACATGCTGACTGGGTTACTTAATAACTTCGTTTC
TACTTCAATAAGTTTGTAATGTAATCTATCAAGTGATTTCTTTTCAAA
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