CN181894

Overview
NameCN181894
Unique NameCN181894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181894_ssr39 microsatellite CN181894_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.785e-57
Identity = 104/129 (80.62%), Postives = 119/129 (92.25%), Query Frame = 1
Query:  151 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            MGRRILNDALR IVNAERRGKA+VEL+PISTVMSSFL IMK +GYIK+FQ+YDPHRVG+I V+L GRVNDC+ LTYRQDV+A+EIE YT   LPTRQWGYVVITTPDG+LDHEEA++RNVGGQVLG+F+
Sbjct:    1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.798e-56
Identity = 101/129 (78.29%), Postives = 117/129 (90.70%), Query Frame = 1
Query:  151 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            MGRRILNDALR IVNAE+RGKA+VEL+P+STVMSSFL IMK +GYIK+FQ++DPHRVG+I V+L GRVNDC+ LTYRQDVKA EI  YT   LPTRQWGY+VITTPDG+LDHEEA++RNVGGQVLG+FH
Sbjct:    1 MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIEG+T   LP+RQ+GY+V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIEG+T   LP+RQ+GY+V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIE +T   LP+RQ+GY+V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +LND L+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIEG+T   LP+RQ+G++V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32
Identity = 63/125 (50.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +LND L+++ NAE++GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N+C  ++ R D+  +EIEG+T   LP+RQ+GY+V+TT  G++DHEEA ++NVGG+VLG+F+
Sbjct:    6 VLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 534
            +L DAL+ I NAE+RGK  V L+P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   +IE +T + LP+RQ+GYVV+TT  G++DHEEA R+++GG++LG+F
Sbjct:    6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFF 129          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 534
            +L DAL+ I NAE+RGK  V L+P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   +IE +T + LP+RQ+GYVV+TT  G++DHEEA R+++GG++LG+F
Sbjct:    6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFF 129          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.509e-29
Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 534
            +L DAL+ I NAE+RGK  V L+P S V+  FL +M   GYI +F++ + HR GKI V L GR+N C  ++ R D    +IE +T + LP+RQ+GYVV+TT  G++DHEEA R+++GG++LG+F
Sbjct:    6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFF 129          
The following BLAST results are available for this feature:
BLAST of CN181894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
R15A5_ARATH6.785e-5780.6240S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
R15A2_ARATH9.798e-5678.2940S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]
RS15A_BRANA3.067e-3353.6040S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A1_ARATH3.067e-3353.6040S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
RS15A_DAUCA1.988e-3252.8040S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
R15A4_ARATH2.596e-3252.0040S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
R15A3_ARATH2.596e-3250.4040S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS15A_DROYA7.071e-3050.8140S ribosomal protein S15a OS=Drosophila yakuba GN... [more]
RS15A_DROME7.071e-3050.8140S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS15B_DROME3.509e-2949.1940S ribosomal protein S15Ab OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181894 ID=CN181894; Name=CN181894; organism=Citrus sinensis; type=EST; length=648bp
TTAGTATAGCCAGCCATTGCCCGTCGCCGTAGCCACCACTGCTGCTGCTG
CCGCTGCCGCTGTGTCACCGTCGCCCTCCGCCATTCCTCGTGAAGATTGT
CACAAACCCTAGAATCCGTCGCTGCCGCCATCGTTGAAGTGCAGACGGTG
ATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGAATGCAGA
GAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACTGTCATGT
CTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGATTTTCAG
TTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTACTAGGCAG
GGTAAATGATTGTCGAGGTCTCACTTATAGGCAGGATGTCAAGGCAAGGG
AAATTGAAGGGTACACGGTGCATGCTCTTCCAACTAGACAGTGGGGCTAT
GTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGGCCCTGAG
GCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACATCTTTGC
CATCCAAACAATTTGGAAAGGAAGGAAGAGTTCTTTAACAGAGTTGCAGC
CTGCCAGAATGTGTTAAAACTTTTAAGTAGAGACCTTTTCAATTTTTG
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