CN181892

Overview
NameCN181892
Unique NameCN181892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1740 contig Csv1_Contig1740:468..1021. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181892 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.205e-39
Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = -2 
Query:  239 AVEEFIGIVMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYERYATYLDAFGPDESYMRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 553
            AVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT Y+RYA YLD+F P+E Y++KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct:  153 AVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257
The following BLAST results are available for this feature:
BLAST of CN181892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH1.205e-3973.33Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181892 ID=CN181892; Name=CN181892; organism=Citrus sinensis; type=EST; length=554bp
GAATATCCAGTAAAAGAAATATATGAACCAGAATTTCCCAAACCAGATGA
AAACACGATAAACCACAGATTTATTAATTCTTAGTTACTGCTGACAAAAG
AAGCTTTTATTCATCTGCCATGCAATTCCAACCGCGGTTTTGCTGGAGTG
AGTATAACAAATTGTCTCCCACTACTCAGAAGCAAGTTCCAGATGTAAAG
AAACCCATAATCACAATAAACCTTTCAGCTATGGGCTAAGCTCTCTGTTC
AACATATGACCCCGCAAGTCCTGAGGTTCCAAGAACAGTAACCTTTCCCC
ACTCAGAACCAAGGCCGGCACATCTCATCTTTAGGAAAATCATTTTTGAA
CCCAACTCTGTTTCTACCTTCTTCCGCATATAGGATTCATCAGGGCCAAA
TGCATCCAAGTAGGTAGCATAACGTTCATAAACTGTACGAATTGCAGAGG
ATAATTCATTTGACAAGGGTTTTACATTCTCACCACTTAGCCCAATTTCA
TCATCAAATTCCATTTTAATGTTCATAACAATCCCAATGAATTCCTCAAC
TGCT
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