CN181878

Overview
NameCN181878
Unique NameCN181878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2290 contig Csv1_Contig2290:1..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: U550_NEMVE (UPF0550 protein v1g238755 OS=Nematostella vectensis GN=v1g238755 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.816e-17
Identity = 62/235 (26.38%), Postives = 108/235 (45.96%), Query Frame = 1
Query:   67 LASAGTATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVM---------VVEKGKDSDAIWRIDALRK----VLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            +A+  T    +   IF+   G  EG+E +KI+ + P +     ++  IGL E L+ FT  F+P+  CE +  ++   +FY+ E D WM+M         + + GK++      D L      VLK+ + +F +F G    + E      L +   Y F + YL      + L   SF D L     +Q L + +   +++QS V++++        Y+  L+ D LV + L  +D
Sbjct:    1 MAAMKTTPGLVNFFIFNSTYGPREGEEHEKIILYIPTEEDIDRKIKTIGLCEALVKFTETFAPDKPCESLHTQKSRQIFYQPEPDFWMIMTISIPFSEKIAKDGKNTIEYHYDDVLDNVLDAVLKQSYKMFKLFNGPFNYLSETYGREALKKRSEY-FFLSYL------QTLNFSSF-DLLDIFAGIQFLPLDKNTFLKIQSFVNLIEHTFSQIK-YTAFLYSDKLVWSGLEQED 226          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_HUMAN (UPF0550 protein C7orf28 OS=Homo sapiens GN=C7orf28A PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.193e-15
Identity = 60/221 (27.15%), Postives = 107/221 (48.42%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV------EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            I++ R G  EGQE +KILF+ P ++  + ++  +GL E ++ FTR FSP    + +  +++   F E E + WMVMVV      ++ KD   +               VL++ +S++ +F G+    +E D    L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++    N   Y+  L++D L+ + L  DD
Sbjct:   29 IYNPRFGPREGQEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVIEYQEEELLDKVYSSVLRQCYSMYKLFNGTFLKAME-DGGVKLLKERLEKFFHRYL------QTLHLQSC-DLLDIFGGISFFPLDKMTYLKIQSFINRMEESL-NIVKYTAFLYNDQLIWSGLEQDD 240          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: U550_DICDI (UPF0550 protein OS=Dictyostelium discoideum GN=DDB_G0288589 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 58/226 (25.66%), Postives = 108/226 (47.79%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEK-----GKDSDAIWRID-----ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLD---SCAGNSSCYSMILFHDLLVSTTLSPDDTINLF 747
            I+  + GQ EG E +KILFF+P  +    Q + +G+SE  + FT+ FSP   CE I  ++ +      E DIWMV+ V       GKD+   +  D      L K +++++  +  F GSI ++  K  S   +R  L  F+  Y+      +++Q     D       ++ L + +   + +   ++ +D       +S  + ++L+ D L+ ++L  ++T  L+
Sbjct:   15 IYCSKLGQKEGTEHEKILFFYPPTINIGEQTNSVGISEAYVLFTKQFSPGQPCEFIHTKKSTLALLHPEEDIWMVLSVYNPTGITGKDNKREYIEDEVDDIILMKTIQQIYQTWQTFNGSIMSLASK-TSYDNVRKRLESFVKPYI------QQIQFDQL-DLFTSLDGIKFLPLNKNVYLTIFGYINSVDLHFQSTLSSFRFGLVLYKDNLILSSLEQNETRILY 232          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_MOUSE (UPF0550 protein C7orf28 homolog OS=Mus musculus PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 59/221 (26.70%), Postives = 107/221 (48.42%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV------EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            I++ R G  EG+E +KILF+ P ++  + ++  +GL E ++ FTR FSP    + +  +++   F E E + WMVMVV      ++ KD  A+               VL++ +S++ +F G+    +E D    L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++        Y+  L++D L+ + L  DD
Sbjct:   27 IYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKAVVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAME-DGGVKLLKERLEKFFHRYL------QTLHLQSC-DLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVK-YTAFLYNDQLIWSGLEQDD 238          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_CHICK (UPF0550 protein C7orf28 homolog OS=Gallus gallus GN=RCJMB04_5g18 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 64/243 (26.34%), Postives = 114/243 (46.91%), Query Frame = 1
Query:   61 MGLASAGTATDGMQLC-------IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV-----EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            M  A+A  A    QL        I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR FSP    + +  +++   F+E E + WMVMVV     EK KD   ++              VL++ +S++ +F G+    +E D    +++  L  F   YL      + L L S  D L     +    + +   +++QS ++ ++    N   Y+  L++D L+ + L  DD
Sbjct:    1 MATAAAAGAGQEKQLAPTLLSFFIYNPKLGPKEGEEEKKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPTKPAKSLHTQKNRQFFHEPEENFWMVMVVRNPIIEKHKDGKPVYEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAME-DGGVKVLKERLEKFFHRYL------QTLHLQSC-DLLDVFCGISFFPLDKMTYLKIQSFINRMEESL-NIVKYTAFLYNDQLIWSGLEQDD 234          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_BOVIN (UPF0550 protein C7orf28 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 60/222 (27.03%), Postives = 110/222 (49.55%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV------EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGS-IRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            I++ R G  EG+E +KILF++P ++  + ++  +GL E ++ FTR FSP    + +  +++   F E E + WMVMVV      ++ KD   +               VL++ +S++ +F G+ +RAM  +D    L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++        Y+  L++D L+ + L  DD
Sbjct:   27 IYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLRAM--EDGGVKLLKERLEKFFHRYL------QTLHLQSC-DLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSIVK-YTAFLYNDQLIWSGLEQDD 238          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_XENLA (UPF0550 protein C7orf28 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 59/220 (26.82%), Postives = 108/220 (49.09%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV-----EKGKDSDAI--WRIDAL-----RKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR F+P    + +  +++   F+E E   WMVMVV     EK KD   +  ++ D L       VL++ + ++ +F G+    +E      L++  L  F   YL      + L L S  D L   G +    + +   ++VQS ++ ++    N   Y+  L++D L+ + L  +D
Sbjct:   19 IYNPKFGPREGEEEKKILFYHPNEVEQNEKIRNVGLCEAIVQFTRTFNPTKPAKSLHTQKNRQFFHEPEEGFWMVMVVKNPVAEKQKDGKTVLEYQEDELLDKVYSSVLQQCYRMYKLFNGTFGRAMEVG-QVELLKDRLEKFFHRYL------QTLHLHSC-DLLDVFGGISFFPLDKMTYLKVQSFINRIEESL-NIVKYTAFLYNDQLIWSGLEQED 229          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_XENTR (UPF0550 protein C7orf28 homolog OS=Xenopus tropicalis GN=TGas077n04.1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 57/220 (25.91%), Postives = 109/220 (49.55%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV-----EKGKDSDAI--WRIDAL-----RKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR F+P    + +  +++   F+E E   WMVMVV     EK K+   +  ++ D L       VL++ + ++ +F G+    +E      L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++    N   Y++ L++D L+ + L  +D
Sbjct:   19 IYNPKFGPREGEEEKKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFNPTKPAKSLHTQKNRQFFHEPEEGFWMVMVVKNPLAEKQKEGKTVLEYQEDELLDKVYSSVLQQCYRMYKLFNGTFSRAMEVG-QVELLKDRLEKFFHRYL------QTLHLHSC-DLLDVFGGISFFPLDKMTYLKIQSFINRIEESL-NIVKYTVFLYNDQLIWSGLEQED 229          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_TETNG (UPF0550 protein C7orf28 homolog OS=Tetraodon nigroviridis GN=GSTENG00024165001 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 57/224 (25.45%), Postives = 108/224 (48.21%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV---------EKGKDSDAIWRIDAL-----RKVLKEVHSLFVMFYGSIRAMLEKDPSGG--LIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            I++   G  EG+E  KILF+ P+D+  + ++  +GL E ++ FTR F P    + +  +++   F+E E + W+VMVV         + GK     ++ + +       V+++ +S++ +F G+    +E   +GG  L+   L  F   YL      + L L S  D L   G +    + +   +++QS V+ ++        Y+  L++D L+ + L  DD
Sbjct:   26 IYNPTFGPREGEEEKKILFYHPSDVEKNEKIRNVGLCEAIVQFTRTFCPTKPAKSLHTQKNRQFFFEPENNFWIVMVVRNPMIEKPNKDGKSQTIEYQEEEILDTVYGAVVRQCYSMYKLFNGTFARAME---TGGVELLMQKLEKFFYKYL------QTLHLQS-SDLLDVFGGISFFPLDKMTYLKIQSFVNRVEESLSLVK-YTAFLYNDQLIWSGLEQDD 238          
BLAST of CN181878 vs. ExPASy Swiss-Prot
Match: CG028_DANRE (UPF0550 protein C7orf28 homolog OS=Danio rerio GN=zgc:55344 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 60/224 (26.79%), Postives = 109/224 (48.66%), Query Frame = 1
Query:  109 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV---------EKGKDSDAIWR----IDAL-RKVLKEVHSLFVMFYGSIRAMLEKDPSGG--LIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDD 732
            I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR F P    + +  +++   F+E E + WMVMVV         + GK     ++    ID++   VL++ +S++ +F G+     E   +GG  L+   L  F   YL      + L L S  D L   G +    + +   +++QS V+ ++        Y+  L++D L+ + L  DD
Sbjct:   26 IYNPKFGPREGEEEKKILFYHPIEIEKNEKIRNVGLCEAIVQFTRTFCPTKPAKSLHTQKNRQFFHEPEENYWMVMVVRNPMVEKPNKDGKPPTVEYQEEEIIDSVYGSVLQQCYSMYKLFNGTFSRAFE---AGGVELLTQKLEKFFYRYL------QTLHLQSC-DLLDVFGGISFFPLDKMTYLKIQSFVNRVEESLSLVK-YTAFLYNDQLIWSGLEQDD 238          
The following BLAST results are available for this feature:
BLAST of CN181878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
U550_NEMVE6.816e-1726.38UPF0550 protein v1g238755 OS=Nematostella vectensi... [more]
CG028_HUMAN2.193e-1527.15UPF0550 protein C7orf28 OS=Homo sapiens GN=C7orf28... [more]
U550_DICDI3.740e-1525.66UPF0550 protein OS=Dictyostelium discoideum GN=DDB... [more]
CG028_MOUSE4.884e-1526.70UPF0550 protein C7orf28 homolog OS=Mus musculus PE... [more]
CG028_CHICK4.884e-1526.34UPF0550 protein C7orf28 homolog OS=Gallus gallus G... [more]
CG028_BOVIN4.884e-1527.03UPF0550 protein C7orf28 homolog OS=Bos taurus PE=2... [more]
CG028_XENLA1.203e-1326.82UPF0550 protein C7orf28 homolog OS=Xenopus laevis ... [more]
CG028_XENTR2.052e-1325.91UPF0550 protein C7orf28 homolog OS=Xenopus tropica... [more]
CG028_TETNG2.680e-1325.45UPF0550 protein C7orf28 homolog OS=Tetraodon nigro... [more]
CG028_DANRE4.572e-1326.79UPF0550 protein C7orf28 homolog OS=Danio rerio GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181878 ID=CN181878; Name=CN181878; organism=Citrus sinensis; type=EST; length=752bp
CTGAGAGCATTCAGCAGCTCGATTTGCCATTCATTTCGCAGTTTATGAAT
TGGAAAACTTATGGGTTTGGCATCGGCTGGCACTGCTACTGATGGTATGC
AATTATGCATATTTGACTTGAGAAGGGGACAAAATGAAGGGCAGGAGCTA
GACAAGATTTTGTTTTTCTTCCCTGCTGATTTGCCCTTTTCAACACAACT
TTCTGTGATAGGACTCAGCGAAGGACTTATCACATTTACAAGAATTTTCT
CACCGGAAGCTGCATGTGAAATCATAGAAGCCGAGAGGCACTCTCATGTT
TTCTATGAAGCAGAAACAGATATCTGGATGGTGATGGTGGTGGAGAAAGG
TAAGGATTCAGATGCCATATGGCGCATTGATGCATTACGCAAGGTTCTTA
AGGAAGTTCACTCTCTTTTTGTGATGTTTTATGGATCTATAAGAGCAATG
CTTGAGAAAGACCCTAGTGGTGGACTAATACGATCTCATTTGTACCCTTT
CATCATGGATTATCTAAGTGATTTTCCTGTTGGGAAGAAACTCCAGTTAC
CCTCATTCCGTGACTGTTTGAAGGAGCGTGGAACTGTACAAATGCTGACC
ATGGGGCGGGAGGCTGCGATTGAAGTTCAGTCACTTGTCAGTGTACTGGA
TTCTTGTGCTGGGAACTCATCTTGCTACTCAATGATTTTATTTCACGATC
TTCTGGTGTCCACAACACTTTCTCCTGATGACACCATAAACTTATTTACA
TA
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