CN181877

Overview
NameCN181877
Unique NameCN181877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:123..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.956e-25
Identity = 59/138 (42.75%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  223 NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            ++ IS       FE     RN     A GF+ Y++FITAT  +    FGTTG    + KEI AFLA    +T+ G+  A  GP +WG CYN E      YC  S +  +PC PG +Y+GRG I I +NYNYGA G A+
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQ--WPCAPGKKYFGRGPIQISYNYNYGAAGSAI 135          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 6.585e-25
Identity = 52/127 (40.94%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  256 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            QF++    RN     A GF+ Y +FITA   +   GFGTTG    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNYG  G A+
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPS--ATWPCASGKRYYGRGPMQLSWNYNYGLCGRAI 216          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.600e-25
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            F+     RN P   A GF+ Y +F+ A   +    FGTTG+   + +E+ AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S +  YPC PG  YYGRG + + WNYNYG  GEAL
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPLQLSWNYNYGPCGEAL 132          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.268e-24
Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  256 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            QF++    RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G+  A  GP +WG C+  E +PS +YC  S +  +PC  G  YYGRG + + WNYNYG  G A+
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAE--WPCASGKSYYGRGPMQLSWNYNYGQCGRAI 201          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.281e-24
Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            + + F  ++     A GF+ Y SF+ A  ++    F  TG    + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG  Y+GRG I I WN+NYG  G+AL
Sbjct:   58 YASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDK-QWPCYPGKSYHGRGPIQISWNFNYGPAGQAL 180          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.719e-23
Identity = 54/127 (42.52%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAI 183          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.719e-23
Identity = 54/127 (42.52%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAI 205          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.793e-22
Identity = 53/126 (42.06%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+
Sbjct:   85 FDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAI 205          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.342e-22
Identity = 53/126 (42.06%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+
Sbjct:   84 FDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAI 204          
BLAST of CN181877 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.342e-22
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  229 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAL 636
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S +  +PC PG  YYGRG I +  NYNYG  G A+
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGPIQLSHNYNYGPAGRAI 155          
The following BLAST results are available for this feature:
BLAST of CN181877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CHID_SOLLC2.956e-2542.75Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_ARATH6.585e-2540.94Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA8.600e-2542.86Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_BRANA4.268e-2440.94Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI10_ORYSJ7.281e-2441.27Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_GOSHI4.719e-2342.52Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI4.719e-2342.52Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_PHAVU1.793e-2242.06Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU2.342e-2242.06Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_HORVU2.342e-2238.2426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181877 ID=CN181877; Name=CN181877; organism=Citrus sinensis; type=EST; length=636bp
GCCCAAGTGAATCTCGAAACAACAGGTAGATCTGGTGAGAACGAGAAAAT
GAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACTAGTAC
TGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGGTGATA
GTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAGTGCCC
AACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTTCCAGG
TTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGGCACAT
GCCGTGGGATTCTGGGATTATCAGTCTTTCATTACTGCCACCGTCAAATA
TCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAGG
AGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATAT
GGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGA
AATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATC
CCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATAC
TGGAACTATAACTATGGAGCCACTGGGGAAGCATTG
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