CN181875

Overview
NameCN181875
Unique NameCN181875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ1_ARATH (Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.446e-51
Identity = 98/136 (72.06%), Postives = 112/136 (82.35%), Query Frame = 2
Query:  296 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  LE N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EA              +DGGI+LETD
Sbjct:    1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIFLSFDEIIDGGIVLETD 136          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ2_ARATH (Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 97/137 (70.80%), Postives = 111/137 (81.02%), Query Frame = 2
Query:  293 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            S D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+ N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K EA              VD G++LETD
Sbjct:    2 SPDSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLDEMVDQGVVLETD 138          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ3_ARATH (Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.670e-48
Identity = 93/135 (68.89%), Postives = 109/135 (80.74%), Query Frame = 2
Query:  299 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EA              VD G++LETD
Sbjct:    6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFLCLDEMVDQGMVLETD 140          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ2_ORYSJ (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.535e-47
Identity = 92/137 (67.15%), Postives = 112/137 (81.75%), Query Frame = 2
Query:  293 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            S ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ A              VDGGIILETD
Sbjct:    5 SKESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDEIVDGGIILETD 141          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ1_ORYSJ (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 91/136 (66.91%), Postives = 109/136 (80.15%), Query Frame = 2
Query:  296 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK  A  EAEI M +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ A              VDGGI+LET+
Sbjct:    1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDEIVDGGIVLETE 136          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ3_ORYSJ (Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.285e-45
Identity = 87/136 (63.97%), Postives = 108/136 (79.41%), Query Frame = 2
Query:  296 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR  V ++ A              VDGGI+LETD
Sbjct:    1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETD 136          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ1_BOVIN (Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 2
Query:  311 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+                VDGG+ILE+D
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESD 138          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ1_PONAB (Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 2
Query:  311 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+                VDGG+ILE+D
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESD 138          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ1_MOUSE (Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 2
Query:  311 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+                VDGG+ILE+D
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESD 138          
BLAST of CN181875 vs. ExPASy Swiss-Prot
Match: COPZ1_HUMAN (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 2
Query:  311 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETD 703
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+                VDGG+ILE+D
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESD 138          
The following BLAST results are available for this feature:
BLAST of CN181875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COPZ1_ARATH6.446e-5172.06Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN... [more]
COPZ2_ARATH1.588e-4970.80Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN... [more]
COPZ3_ARATH6.670e-4868.89Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN... [more]
COPZ2_ORYSJ2.535e-4767.15Coatomer subunit zeta-2 OS=Oryza sativa subsp. jap... [more]
COPZ1_ORYSJ4.324e-4766.91Coatomer subunit zeta-1 OS=Oryza sativa subsp. jap... [more]
COPZ3_ORYSJ5.285e-4563.97Coatomer subunit zeta-3 OS=Oryza sativa subsp. jap... [more]
COPZ1_BOVIN3.334e-2343.51Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=... [more]
COPZ1_PONAB1.267e-2242.75Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 P... [more]
COPZ1_MOUSE1.267e-2242.75Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 P... [more]
COPZ1_HUMAN1.267e-2242.75Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181875 ID=CN181875; Name=CN181875; organism=Citrus sinensis; type=EST; length=703bp
GAGGCTCACAGGTGCCTCCTCATCCGTCCCAAGTGACCCCAAATTTTAAC
TTATTTATTATACATGCGGGGGGTACTTGAGTCATATCATTAATAATATT
AAGGAAGTGCTATTTCTCAAAAGCTGTTGTAGAAAGCGTTATATTTGAAG
ACTTAGTATTGTCATGTTGTTCGCTCGGTTAATCAATAAACGTCCATTAC
GTTCTTCTCTGTATTGTAATCTTCCTTGACTCTCGGGAGTCTCAACGCTC
GAAATTAATTGACTGCAGACGACCAAGTTTAATCGAACAACAAGCATGGA
TACTTGTCCGTCCATAAAGAATATCCTTCTCCTGGATTCTGAAGGGAAAC
GTGTAGCAGTCAAGTATTATTCAAACGACTGGCCAACCAACAGTGCAAAG
GAAGCTTTTGAGAAAGCTGTGTTTACCAAGACCCAGAAAACAAATGCACG
GACCGAAGCGGAGATAGCTATGCTTGAGGGCAACGTTATTGTTTACAAGT
TTGTTCAAGACCTTCACTTTTTTGTCACTGGGGGTGAAGATGAAAATGAG
CTGATCTTAGCCACGGTTCTTCAGGGATTTTTTGATGCAGTTGGTCTTCT
TCTTAGAGGCAATGTGGACAAGAAGGAGGCTCTTGAGAACTTGGATCTTA
TCTTGTTGTGCCTTGATGAAATTGTTGATGGAGGTATCATTCTGGAAACT
GAT
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