CN181868

Overview
NameCN181868
Unique NameCN181868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181868 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.247e-40
Identity = 93/187 (49.73%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   85 MGYGRLQPSSDPGGSSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVGLKTRAVG---PTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTW 636
            MGY RL PS   G S+  +  P  ATS P+                 A+++   V   +  G++    G   P +  KPTQAISRTCSK+LYPNLC+ +LL+FPGSLTA E +L+HISFN TLQ FS+ALY +S I+Y QM P VRSA+D CLELLDDSVDAL+R+L SV+++ G +     DV+TW
Sbjct:    1 MGYDRLGPS---GPSNPNQKDP--ATSLPE---LQKKTKTKLILFTLAVLVVGVVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE--SHSDVMTW 177          
BLAST of CN181868 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.562e-32
Identity = 79/192 (41.15%), Postives = 110/192 (57.29%), Query Frame = 1
Query:   85 MGYGRLQPSSDPGG---SSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVGLKTRAV----GPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASE-QDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTW 636
            MGY RL PS   G    S+         +++ QP                 L I+  ++A +  G+++R       P +  KP+QAIS+ C  T +P LCV SL++FPGSL AS  +DL+H++ NMTL HFS ALY ++ +S++ M P  RSA+D C+ELLDDSVDALSR+L SV+        K +DV TW
Sbjct:    1 MGYERLGPSGATGSVTTSTTTAPILNQVSTSEQPENNNRRSKKKLVVSSIVLAISLILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSVV----SSSAKPQDVTTW 188          
The following BLAST results are available for this feature:
BLAST of CN181868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PME61_ARATH7.247e-4049.73Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH5.562e-3241.15Probable pectinesterase/pectinesterase inhibitor 3... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181868 ID=CN181868; Name=CN181868; organism=Citrus sinensis; type=EST; length=638bp
GATTGTATGCAAACCCTTCACATTCTCCTCGAAGACCCAGCCAAACAAAA
AAGACTAACTGAGGTCATCGGTACTTGAAATCTGATGGGTTACGGCAGGC
TCCAGCCCTCCTCCGACCCCGGGGGTTCTTCATTCCGCGAGGACCAACCC
GGGCATGCCACGTCGGCACCCCAGCCTTCTTCCCGCAGCAGGAAGAAGCT
CATCCTCCTCTCCGTCCTCTCATTCGCATTAATCATCGCCTCCGCCGTCT
CCGCCGTCCTCCTCGTGGGCCTCAAGACGCGTGCCGTGGGCCCCACCATC
GGCCACAAGCCCACCCAGGCCATTTCCCGCACGTGCAGCAAGACCCTCTA
CCCGAACCTCTGCGTCAGCTCGCTCCTCAACTTCCCGGGCTCGCTCACCG
CCTCCGAGCAGGACCTCGTCCACATTTCGTTCAACATGACGCTGCAGCAC
TTCAGCAGGGCCCTGTATTTCACCTCCGGTATCTCCTATCTCCAGATGGA
CCCACACGTGCGCTCCGCATTCGACGACTGCCTCGAGCTCCTGGACGACT
CCGTGGACGCGCTCTCACGCTCCCTCGGCTCCGTGCTGCTGCTACCCGGA
GGCGATATTAATAAAAGAGAGGACGTGCTGACGTGGCT
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