CN181866

Overview
NameCN181866
Unique NameCN181866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2288 contig Csv1_Contig2288:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181866 vs. ExPASy Swiss-Prot
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 56/122 (45.90%), Postives = 69/122 (56.56%), Query Frame = 2 
Query:  311 QWKSETQQQIYSSKLIQALNHV-------NGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTXXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRV 655
            +W+SE QQQIYS+KL+ AL  +       + +S S PR GRAVRE ADR LAVAA+G+T WSRAIL+              R+                    +VLRLKAK LPAVQRKV+V
Sbjct:   49 KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKR-QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKV 169
[Close]
BLAST of CN181866 vs. ExPASy Swiss-Prot
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16
Identity = 54/124 (43.55%), Postives = 65/124 (52.42%), Query Frame = 2 
Query:  311 QWKSETQQQIYSSKLIQALNHVN-------GASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILT--XXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRV 655
            +W+SE QQ+IYS+KL QAL  V         +SP+A +RG+AVREAADR LAV+A+GRT WSRAIL                                       SVLRL  KS+P V RKVRV
Sbjct:   47 RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRV 170
The following BLAST results are available for this feature:
BLAST of CN181866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH147_ARATH8.264e-1845.90Transcription factor bHLH147 OS=Arabidopsis thalia... [more]
BH148_ARATH5.923e-1643.55Transcription factor bHLH148 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181866 ID=CN181866; Name=CN181866; organism=Citrus sinensis; type=EST; length=657bp
GAGGCTCCACTCAACCAAACGACGTCATTTCACCCACCCCGTTCCGTTTT
CGTTCCTGATCTCCTTTTTTATTTCTCTCAAAGGTAATAATATTCTCTCC
CAAAATTTCTCAAAATTCCGTTTTCTCAAATCCAATTTCTAATAGGTTGT
TCTCTCCTCAGCAGGTCTGCACTTGGAATATTTCCGAATATTATCCACCA
AAACGATGTCGTCAACTCTGATATCGAATCCGGTAACGAACTCTGATCGC
TCTAAAAGGAAAAAGAAAAAGAAGGCCTCACAATCAAAAGAGTCCAAGCA
AAACCAAACCCAATGGAAATCAGAAACTCAGCAACAAATCTACTCCTCAA
AACTCATCCAAGCTTTAAACCACGTCAACGGCGCGTCTCCTTCAGCTCCG
CGCCGAGGGCGAGCAGTCCGGGAGGCGGCTGACCGCGTGCTAGCCGTGGC
GGCCAAAGGGAGGACCCGGTGGAGTCGAGCCATTTTGACTCACAGACTCA
AGCTCAAGTTTAGAAAACATAAGAAGGTGAATAGAGTATCGGCTCCTTCA
GCAGCCGCTGCGGCCACCGGGAGTGGCCGGTCAAAGAAGGCGGGATTTAG
CGTTTTGAGGCTGAAAGCCAAGAGTTTGCCGGCTGTTCAACGGAAAGTTC
GCGTCCT
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