CN181865

Overview
NameCN181865
Unique NameCN181865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:167..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.706e-59
Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +GMGVADHSK+T+LEL+RKKVHRYVIFKID         KTGGPAES+D+F A+LP+NDCRYAVYDFDFVTSENCQKSKIFFIAWSPD SRIRAKMLYATSK+RFRRELDG+HYEIQATDP+EMDLEV+R+RA
Sbjct:   10 SGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERA 142          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.280e-54
Identity = 101/133 (75.94%), Postives = 112/133 (84.21%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +GMGVAD SK+T+LELQRKK HRYV+FKID         KTG P ESYDDF ASLPDNDCRYAVYDFDFVTSENCQKSKIFF AWSP  S IRAK+LY+TSKD+  REL GIHYEIQATDP+E+DLEV+R+RA
Sbjct:   13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERA 145          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.639e-52
Identity = 97/133 (72.93%), Postives = 112/133 (84.21%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +G+GVA   K T+LELQRKK HRYVIFKID         KTG   ES+DDF  SLP++DCRYA+YDFDFVT ENCQKSKIFF+AWSP VSRIRAKMLYATSK+RFRRELDG+HYEIQATDPSE+D+E++R+RA
Sbjct:   12 SGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERA 144          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 94/133 (70.68%), Postives = 107/133 (80.45%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +GMGVA   + T+LELQ KK  RYVIFKI+         KTG   ESYDDF ASLP+NDCRYA+YDFDFVT EN QKSKIFFIAWSP  SRIRAKMLY+TSKDR ++ELDG HYEIQATDP+E+DLEV+R+RA
Sbjct:   12 SGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERA 144          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 88/129 (68.22%), Postives = 105/129 (81.40%), Query Frame = -3
Query:  302 VADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 688
            V + SKS + EL+R+KVHRYVIFKID         KTG P ESYDDFTASLP +DCRYAVYD DFV+ +NC+KSKIFFI+WSP VSRIRAK +YA S+++FR ELDG+H+EIQATDP +MDLEV+R RA
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRA 148          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.550e-44
Identity = 81/132 (61.36%), Postives = 105/132 (79.55%), Query Frame = -3
Query:  305 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 700
            +GM V D  K  +LEL+ K+ +R+++FKID         K G P E+YDDFT+S+PD++CRYAVYDFDF T +NCQKSKIFFIAWSPD SR+R+KMLYA+SKDRF+RE++GI  E+QATDPSEM L++I+ R
Sbjct:    6 SGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGR 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.892e-44
Identity = 81/133 (60.90%), Postives = 105/133 (78.95%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +GM V D  K  +LEL+ K+ HR++++KI+         K G P ESY+DF ASLP+N+CRYAVYDFDFVT+ENCQKS+IFFIAW PD +R+R+KM+YA+SKDRF+RELDGI  E+QA DP+EM L+VI+ RA
Sbjct:    6 SGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRA 138          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.892e-44
Identity = 81/132 (61.36%), Postives = 105/132 (79.55%), Query Frame = -3
Query:  305 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 700
            +GM V+D  K  +LEL+ K+ +R+++FKID         K G P E+Y+DFT S+P+++CRYAVYD+DF T ENCQKSKIFFIAWSPD SR+R+KMLYA+SKDRF+RELDGI  E+QATDPSEM L++I+ R
Sbjct:    6 SGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGR 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.005e-43
Identity = 80/133 (60.15%), Postives = 104/133 (78.20%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +GM V D  K  +LEL+ K+  R+++FKI+         + G P ESYDDFTA LP ++CRYAV+DFDFVT ENCQKSKIFFI+W+PD SR+R+KMLYA+SKDRF+RELDGI  E+QATDPSEM +++++ RA
Sbjct:    6 SGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.313e-43
Identity = 82/133 (61.65%), Postives = 104/133 (78.20%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +GM V D  K  +LEL+ K+ +R++I+KID         K G P  +YDDF ASLP N+CRYA++D+DFVT ENCQKSKIFFIAWSPD SR+R+KM+YA+SKDRF+RELDGI  E+QATDP+E+ L+VIR RA
Sbjct:    6 SGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRA 138          
The following BLAST results are available for this feature:
BLAST of CN181865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ADF_VITVI1.706e-5981.95Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF6_ARATH6.280e-5475.94Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF11_ORYSJ2.639e-5272.93Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ1.038e-4870.68Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF10_ORYSJ1.268e-4668.22Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF8_ARATH1.550e-4461.36Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF1_PETHY5.892e-4460.90Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF10_ARATH5.892e-4461.36Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF1_ORYSJ1.005e-4360.15Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF7_ORYSJ1.313e-4361.65Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181865 ID=CN181865; Name=CN181865; organism=Citrus sinensis; type=EST; length=708bp
CCCTTTTTTTTTCTATTAGAATACCCATTTCATTAAGCAAAGTCGAACAG
CATAAGTATCCATGTCTATGTCCAATTTTACCTGAGAAGCATCATGGCAA
TAGAGAGCCCGTGTCCTCTGGCATCGCAGTGCCTCAGCCATGAGCTCGTT
ATCAGCCTTCTCAGGTGCTGATTATTTAACAATAGCTATATGTACTATGT
GCCACACAAATACGGCAACTAATTGGAGGACAGTTTGTGCCTTCAGACCA
CAAATGCAGTCTCAAGGAAACAAATTCTTTTCCTTCAGGGCATTCTCAGC
GTGCACGGTCTCTGATCACCTCAAGATCCATCTCACTTGGGTCAGTTGCC
TGAATTTCATAGTGGATGCCGTCCAGCTCCCTCCTGAACCTGTCCTTTGA
TGTTGCATACAGCATCTTAGCTCGGATTCGGGACACGTCAGGAGACCATG
CAATGAAAAAGATCTTGCTTTTCTGACAATTCTCTGAGGTCACAAAATCA
AAGTCATAAACTGCATAACGACAGTCATTATCCGGCAAAGATGCAGTGAA
ATCGTCATAGCTCTCAGCTGGGCCTCCAGTCTTTTCAACCACTACCTCCT
TTTTCTTCTCATCAATCTTAAAAATCACATACCGATGTACTTTCTTCCTC
TGCAACTCTAGGTATGTGCTCTTGCTGTGATCAGCAACTCCCATTCCAGT
TTTTTTTT
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