CN181864

Overview
NameCN181864
Unique NameCN181864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN181864 vs. ExPASy Swiss-Prot
Match: U308_ARATH (UPF0308 protein At2g37240, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 50/165 (30.30%), Postives = 75/165 (45.45%), Query Frame = 3 
Query:  150 VLPISSPKPRTPTISSSKSRNNAISRPRLLVRASATEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYYGVGRTFFNPASAKVFSRF 644
            VLP  S K    ++S    R +A+    +   +S         D L    +    G  +   DLW   +  AVVA  RHFGC  C + A+ L E K   D++GV L+ +G G+ ++A    E+  F  + +YADP+   Y  L    GV  TF   A+ K+   +
Sbjct:   29 VLPGYSVKSHFRSVSL---RRSAVVVSAITGASSGAGIGKGTADSLDTVKVLDLRGNEIPISDLWKDRK--AVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQANTFVEQTKFKGE-VYADPNHASYEALEFVSGVSVTFTPKAAMKILESY 187
The following BLAST results are available for this feature:
BLAST of CN181864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U308_ARATH2.429e-1230.30UPF0308 protein At2g37240, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181864 ID=CN181864; Name=CN181864; organism=Citrus sinensis; type=EST; length=675bp
GCTGCAGGTGTTCATCGTCTTTCTCTGTTTCTCAAATGTAAAATCGCACG
CCACAAGCCATGGCAGCATTACCTACAGACACGTTGCAATCGGTGCGAGT
GCGATCTCTCTGCTTCACTCATTCTCAAATTCCAAAATTGACCTCCGGGG
TTCTTCCAATTTCGTCTCCCAAACCTCGAACTCCTACAATTTCCTCCTCG
AAATCGAGAAACAATGCCATAAGCAGACCCCGTCTCCTTGTTAGGGCCTC
CGCCACTGAATTCCCGGCAAATGTTGGCGATTTACTAGGTGACTTCAGCA
TCTTTACCGCTGCCGGTGAGCCGGTCTTGTTCAAAGACCTTTGGGACCAG
AACGAGGGAGTAGCTGTTGTTGCACTTTTAAGGCACTTTGGGTGCCCTTG
CTGCTGGGAACTTGCATCGGCTTTGAAAGAATCAAAAGCAAGGTTTGACT
CAGCTGGTGTGAAACTAATAGCAGTTGGCGTTGGTACTCCTAACAAAGCT
CAAATTCTTGCAGAGCGGTTACCCTTTCCTATGGATTGCCTTTATGCTGA
TCCTGATCGCAAGGTGTATAATCTATTGGGCTTATACTATGGTGTCGGCC
GTACATTTTTCAATCCAGCTAGTGCTAAAGTGTTTTCGAGATTTGAGGCT
CTGCGGAAAGCTGTGCCAAACTATA
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