CN181863

Overview
NameCN181863
Unique NameCN181863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10504 contig Csv1_Contig10504:198..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181863 vs. ExPASy Swiss-Prot
Match: U308_ARATH (UPF0308 protein At2g37240, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 61/185 (32.97%), Postives = 89/185 (48.11%), Query Frame = -3 
Query:  158 D*LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYYGVGRTFFNPASAKVF-SRFEALRKAVQNYTIEATPDD-RSSVLQQGGMFVF-KGK-QLLYARKDEGTGDHASLDDVFDICC 700
            D L    +    G  +   DLW   +  AVVA  RHFGC  C + A+ L E K   D++GV L+ +G G+ ++A    E+  F  + +YADP+   Y  L    GV  TF   A+ K+  S  E  R   Q++ +    D       QQGG+ V   GK  + Y RKD+  GD   ++++   CC
Sbjct:   69 DSLDTVKVLDLRGNEIPISDLWKDRK--AVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQANTFVEQTKFKGE-VYADPNHASYEALEFVSGVSVTFTPKAAMKILESYMEGYR---QDWKLSFMKDTVERGGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILKACC 247
The following BLAST results are available for this feature:
BLAST of CN181863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U308_ARATH5.218e-1632.97UPF0308 protein At2g37240, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181863 ID=CN181863; Name=CN181863; organism=Citrus sinensis; type=EST; length=714bp
CCCTAACAGACGATAACTATATGATTATTATACCCAACATATTCCATGCT
ATTGGTATTTCACAGGTGATACTGAAAACAAAATTACATGATGCTTGAAC
GTACCAAATATCTCAACAACTACTTTCAGCTCTAAAACTTCATGCAACCG
GAACCTTACAGCAAATGTCAAAGACATCATCTAAAGAGGCATGATCACCG
GTCCCTTCATCTTTGCGAGCATATAATAGTTGCTTCCCTTTGAAGACAAA
CATCCCTCCCTGTTGCAGAACACTACTTCTATCATCTGGGGTGGCTTCAA
TTGTATAGTTTTGCACAGCTTTCCGCAGAGCCTCAAATCTCGAAAACACT
TTAGCACTAGCTGGATTGAAAAATGTACGGCCGACACCATAGTATAAGCC
CAATAGATTATACACCTTGCGATCAGGATCAGCATAAAGGCAATCCATAG
GAAAGGGTAACCGCTCTGCAAGAATTTGAGCTTTGTTAGGAGTACCAACG
CCAACTGCTATTAGTTTCACACCAGCTGAGTCAAACCTTGCTTTTGATTC
TTTCAAAGCCGATGCAAGTTCCCAGCAGCAAGGGCACCCAAAGTGCCTTA
AAAGTGCAACAACAGCTACTCCCTCGTTCTGGTCCCAAAGGTCTTTGAAC
AAGACCGGCTCACCGGCAGCGGTAAAGATGCTGAAGTCACCTAGTTAATC
GCCAACATTTGCCG
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