CN181846

Overview
NameCN181846
Unique NameCN181846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.656e-41
Identity = 76/117 (64.96%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  264 SLFCSLFAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFP 614
            +L   L   V AEDPY +FNWNVTYG I PLGV Q+GILIN QFPGP I+  +N+N+++NVFN+LDEPFL +WNG+Q+R+NS++DG  GT CPI PG+NFTY  QVKDQIGS+ YFP
Sbjct:   10 ALLLCLSVGVIAEDPYLYFNWNVTYGTIAPLGVPQQGILINGQFPGPRINCTSNNNIVVNVFNNLDEPFLFTWNGVQHRKNSWQDGTPGTMCPIMPGQNFTYRFQVKDQIGSYSYFP 126          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.986e-38
Identity = 76/127 (59.84%), Postives = 95/127 (74.80%), Query Frame = 3
Query:  234 LNLAVAASICSLFCSLFAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFP 614
            L LA AA++         +V AEDPY    WNVTYG   PLGV Q+ ILIN QFPGP+I+S +N+N+IINVFN+LDEPFLL+WNGIQ+R+N ++DG  GT CPI PG N+TY  Q KDQIGS++Y+P
Sbjct:   11 LYLAAAATV---------VVHAEDPYFHHVWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNVIINVFNNLDEPFLLTWNGIQHRKNCWQDGTPGTMCPIMPGTNYTYHFQPKDQIGSYFYYP 128          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.831e-33
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 3
Query:  228 MPLNLAVAASICSLFCSLFAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFP 614
            M    ++ AS    F  L A+  A DP+  +++ V+Y    PLGV Q+ I +N QFPGP +++ TN N+++NVFN LDEP LL+W GIQ RRNS++DGV GT CPIPP  NFTY  QVKDQIGSF+Y P
Sbjct:    1 MAATCSLLASFLLCFALLSAVSFAADPFVSYDFRVSYLTASPLGVPQQVIAVNGQFPGPLLNATTNYNVVVNVFNHLDEPLLLTWPGIQMRRNSWQDGVLGTNCPIPPRWNFTYQFQVKDQIGSFFYSP 129          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.076e-32
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  297 AEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFP 614
            A DPY F+N+ V+Y    PLGV Q+ I IN +FPGP I+  TN+NL++NV N LDE  LL WNGIQ RR S++DGV GT CPIPP  N+TY  QVKDQIGSF+YFP
Sbjct:   20 AADPYSFYNFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNENLVVNVRNKLDEGLLLHWNGIQQRRVSWQDGVLGTNCPIPPKWNWTYEFQVKDQIGSFFYFP 125          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.930e-30
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  270 FCSLFAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFP 614
            F  +F    A DPY  +++ ++Y    PLGV Q+ I +N +FPGP I++ TN N+ +NV N LDEP LL+W G+Q RRNS++DGV GT CPIPP  NFTY  Q+KDQIGS++Y P
Sbjct:   14 FALIFGFSFAGDPYVSYDFTLSYITASPLGVPQQVIAVNGKFPGPVINATTNYNVHVNVLNHLDEPLLLTWPGVQMRRNSWQDGVLGTNCPIPPNWNFTYDFQLKDQIGSYFYSP 128          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: LAC2_THACU (Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  246 VAASICSLFCSLFAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFL-----LSWNGIQNRRNSFEDG-VYGTTCPIPPGKNFTYILQVKDQIGSFYY 608
            +A S  SLF +L  + SA      + ++V  G + P GV +  +L+N +FPGP I +   D L I V N L +P +     + W+G+   R + EDG  + T CPIPP +++TY + + +Q G+++Y
Sbjct:    1 MARSTTSLF-ALSLVASAFARVVDYGFDVANGAVAPDGVTRNAVLVNGRFPGPLITANKGDTLKITVRNKLSDPTMRRSTTIHWHGLLQHRTAEEDGPAFVTQCPIPPQESYTYTMPLGEQTGTYWY 126          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: LAC1_THACU (Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 34/103 (33.01%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  318 FNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFL-----LSWNGIQNRRNSFEDG-VYGTTCPIPPGKNFTYILQVKDQIGSFYY 608
            +   ++ G+I P GV++   L+N  +PGP I +   D L + V N L  P +     + W+G+   RN+ +DG  + T CPI P +++TY + + DQ G+++Y
Sbjct:   24 YGLKISDGEIAPDGVKRNATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPEMYRTTSIHWHGLLQHRNADDDGPSFVTQCPIVPRESYTYTIPLDDQTGTYWY 126          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: LAC3_THACU (Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  318 FNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFL-----LSWNGIQNRRNSFEDG-VYGTTCPIPPGKNFTYILQVKDQIGSFYY 608
            +N  ++ G I P GV +   L+N  +PGP I +   D L + V N L  P +     + W+G+   RN+ +DG  + T CPI P  ++TY + + DQ G+++Y
Sbjct:   24 YNLKISNGKIAPDGVERDATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPDMYRTTSIHWHGLLQHRNADDDGPAFVTQCPIVPQASYTYTMPLGDQTGTYWY 126          
BLAST of CN181846 vs. ExPASy Swiss-Prot
Match: LAC2_ORYSJ (Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/118 (29.66%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  258 ICSLFCSLFAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDG-VYGTTCPIPPGKNFTYILQVKDQIGSFYY 608
            + SL  +LFA+ +  D  R+  +++   ++  L   +  + +N  +PGP I++   D +I+NV N +     + W+G++ RRN + DG  Y T CPI  G ++ Y   V  Q G+ ++
Sbjct:   12 VSSLLLALFALGAHADVKRY-QFDIVMSNVSRLCHEKAMVTVNGSYPGPTIYAREGDRVIVNVTNHVKHNMTIHWHGLKQRRNGWADGPAYVTQCPIGSGGSYVYDFNVTRQRGTLWW 128          
The following BLAST results are available for this feature:
BLAST of CN181846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ASOL_TOBAC1.656e-4164.96L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
ASOL_BRANA4.986e-3859.84L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
SKS1_ARATH2.831e-3353.49Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]
SKU5_ARATH1.076e-3262.26Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
SKS2_ARATH2.930e-3053.04Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
LAC2_THACU1.118e-1334.65Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 ... [more]
LAC1_THACU3.046e-1133.01Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 ... [more]
LAC3_THACU3.978e-1133.98Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 ... [more]
LAC2_ORYSJ3.978e-1129.66Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181846 ID=CN181846; Name=CN181846; organism=Citrus sinensis; type=EST; length=627bp
GAGGACACTCACACATATCCTCTGCGCCGCACTTAAATACGTGCCATTCC
TCATCATTCATCATTCACTACTCACCTCTTAACTTCTTTCTTTCCTCTTT
TATTTTTCAATTTTTCTTTTGGAAAAAAAAAAAAACTCTCTCCCCCCCCC
CCCCCAATTCATCGCACTAATCTGAAAGGTCACAAAAGCAAACAAGACTT
GACTTAGCCTTCTGCCTTCCCCCCAAAATGCCGCTAAACTTAGCTGTCGC
TGCTTCAATTTGCTCCTTGTTTTGTTCCCTTTTCGCCATTGTCAGTGCTG
AGGATCCTTACAGATTCTTCAACTGGAATGTCACTTACGGCGACATCTAT
CCACTCGGCGTTCGCCAACGGGGCATTTTGATAAACTGGCAATTCCCAGG
CCCCGATATTCACTCAGTTACAAATGACAATCTTATTATCAATGTGTTCA
ACAGCTTAGACGAGCCTTTTCTTCTTTCCTGGAATGGAATTCAAAACAGG
AGGAATTCATTTGAAGATGGTGTATATGGAACGACTTGCCCTATTCCTCC
TGGGAAGAACTTTACATACATTCTTCAAGTGAAGGATCAAATTGGTAGCT
TTTACTATTTCCCTTTCCCTTGCATTC
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