CN181845

Overview
NameCN181845
Unique NameCN181845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7093 contig Csv1_Contig7093:673..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181845 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.136e-35
Identity = 73/153 (47.71%), Postives = 100/153 (65.36%), Query Frame = -2
Query:  353 DYFKIGG-VFRIGSISDNPTGGGIYQ---DTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCG 799
            +YF I   VF+  +I+D+PT   I     +  V+   +R F+E+VF+N E  +QS+HL+GY F+ V ++ G WT   R  YNL DAV+R TVQVYPK W+AI +  DN GMWN+RSE+  R+YLGQQ Y  V +   SLRDEY +P+ +  CG
Sbjct:  388 EYFGISDKVFKYDTITDDPTPEQIKNIKIEPNVLNITHRTFVEVVFENHEKSVQSWHLDGYSFFSVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKCWAAILLTFDNCGMWNVRSENTERRYLGQQLYASVLSPEKSLRDEYNMPETSLQCG 540          
BLAST of CN181845 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.047e-34
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  341 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAG 721
            T V  A YR F+EI+F+N E  I++YHL+GY F+ V ++ G+W+   R  YNL D ++R  +QVYP SW+AI +  DN GMWNLRSE W + YLG+Q Y  V + S SLRDEY IP N  LCG   G
Sbjct:  419 TNVKNATYRNFVEIIFENHEKTIRTYHLDGYSFFAVAVEPGRWSPEKRKNYNLVDGLSRNNIQVYPNSWAAIMLTFDNAGMWNLRSEMWEKTYLGEQLYFSVLSPSRSLRDEYNIPDNHPLCGIVKG 545          
BLAST of CN181845 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.083e-31
Identity = 66/149 (44.30%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  353 DYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCG 799
            D  K+  V+++      P  G     T+++   YR F+E+V QN++  +QSYH++GY F+VVGMD G+WT  SR  YN  D +AR T+QVYP +WSAI I+LDN G WNLR+E+    YLGQ+ Y+RV     + + E+  P N   CG
Sbjct:  401 DKLKVKDVYKL-DFPKRPLTGPAKVATSIINGTYRGFMEVVLQNNDTKMQSYHMSGYAFFVVGMDYGEWTENSRGTYNKWDGIARSTIQVYPGAWSAILISLDNPGAWNLRTENLDSWYLGQETYVRVVNPDENNKTEFGHPDNVLYCG 548          
BLAST of CN181845 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.551e-30
Identity = 60/149 (40.27%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  353 DYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCG 799
            D  K+ G +++    D P    +  D +++ A Y+ FI++VFQN++  IQS+H++GY F+VVGMD G W+   +  YN  DA++R T++VYP  W+A+ I+LDNVG+WN+R E+  R YLG++ Y+R+       + E   P N   CG
Sbjct:  404 DRNKVKGAYKL-DFPDRPFNRPLRLDRSMINATYKGFIQVVFQNNDTKIQSFHVDGYSFFVVGMDFGIWSEDKKGSYNNWDAISRSTIEVYPGGWTAVLISLDNVGVWNIRVENLDRWYLGEETYMRITNPEEDGKTEMDPPDNVLYCG 551          
BLAST of CN181845 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.582e-29
Identity = 56/123 (45.53%), Postives = 85/123 (69.11%), Query Frame = -2
Query:  353 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCG 721
            ++++ A Y+ FI+++FQN++  IQS+H++GY F+VV MD G W+    + YN  DAVAR TV+VYP +W+A+ I+LDNVG+WN+R E+  R YLGQ+ Y+R+     +   E   P+N   CG
Sbjct:  429 SSIINATYKGFIQVIFQNNDTKIQSFHIDGYAFYVVAMDFGIWSEDRNSSYNNWDAVARSTVEVYPGAWTAVLISLDNVGVWNIRVENLDRWYLGQETYMRIINPEENGSTEMDPPENVMYCG 551          
The following BLAST results are available for this feature:
BLAST of CN181845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ASOL_BRANA6.136e-3547.71L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
ASOL_TOBAC1.047e-3451.97L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
SKU5_ARATH1.083e-3144.30Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
SKS1_ARATH4.551e-3040.27Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]
SKS2_ARATH8.582e-2945.53Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181845 ID=CN181845; Name=CN181845; organism=Citrus sinensis; type=EST; length=800bp
CCCCTTTCGAGTTGATTGCTTACATTCCATTACTGAAAGGCTGAGCCAAT
TATCATATTGATAAATGAGAATCAACATAATTTTAAATAATACTAACAGT
AATGCTATAACAGCTACCGCTGTAACAACGGAAATACAACCTTCAATAGA
AAAGAATGAGACCTCGAGCTGGGGTCAATTTCAAGTTCCACTTGTACACA
CTCCTCGCATAAATAAGCAAAGCAACATTAAACTAATCGAATATAAGATT
AGAAATCAAAATTCTACTCGAATCCACAAATTGCGTACCCAACGGTGGAT
CATTTTATTAAATAATAATTTAGAGGGGCCTCGTGTGTCTGCCAGCTGCT
TTGCCGCAAAGACGTGCATTCTTTGGGATGGGATATTCATCCCTTAGTGA
AGTTGATGCTGTGTAAACACGCAAGTAAAATTGTTGTCCAAGGTACTGTC
GTGCCCAAGACTCAGACCTCAAGTTCCACATACCTACGTTATCCAGTGCT
ATATAAATCGCAGACCATGACTTGGGATACACCTGAACGGTTACACGGGC
AACTGCATCGCGGAGATTGTACTGGTTTCTACTAGCAGATGTCCATTGGC
CTCCATCCATACCGACAACCCAAAATTGGTAGCCATTAAGGTGATAGCTC
TGGATAATGTCTTCATCATTTTGGAACACAATTTCAATAAAAGCTCTGTA
GTCAGCCCCCATAACTGCTGTGTCTTGGTAAATCCCTCCACCTGTAGGAT
TATCAGAAATGCTTCCGATGCGGAAAACTCCTCCAATCTTGAAGTAGTCA
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