CN181842

Overview
NameCN181842
Unique NameCN181842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:498..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU1_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.475e-81
Identity = 150/162 (92.59%), Postives = 157/162 (96.91%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGETVDLVGL+ETRN TVTGVEMFQK LDEA+AGDNVGLLLRGVQK DIQRGMVLAKPGTITPHTKF AIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTG+V+SIMNDKDEES MV+PGDRVKMVVELI+PVACEQGMRFAIREGGKTVGAGVIQSIIE
Sbjct:  318 KVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESTMVLPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU2_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.011e-80
Identity = 147/162 (90.74%), Postives = 157/162 (96.91%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            RVGETVD+VG+K+TRN TVTGVEMFQK LDEA+AGDNVGLLLRG+QK DIQRGMVLAKPGTITPHTKF AIVYVLKKEEGGRHSPFF+GYRPQFYMRTTDVTG+V+ IMNDKDEESKMVMPGDRVK+VVELI+PVACEQGMRFAIREGGKTVGAGVIQSIIE
Sbjct:  318 RVGETVDIVGVKDTRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_ARATH (Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.460e-79
Identity = 144/162 (88.89%), Postives = 158/162 (97.53%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGETVDLVGL+ETR++TVTGVEMFQK LDEA+AGDNVGLLLRG+QKADIQRGMVLAKPG+ITPHTKF AI+YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTG+V+ IMNDKDEESKMVMPGDRVK+VVELI+PVACEQGMRFAIREGGKTVGAGVI +I+E
Sbjct:  315 KVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIIYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTKIMNDKDEESKMVMPGDRVKIVVELIVPVACEQGMRFAIREGGKTVGAGVIGTILE 476          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.596e-78
Identity = 144/162 (88.89%), Postives = 153/162 (94.44%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE VD+VGLK+TRN TVTGVEMFQK LDEAMAGDNVGLLLRG+QK DIQRGMVLAKPGTITPHTKF A+VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTG+V+ IM+DK EESKMVMPGDRV MVVELIMPVACEQGMRFAIREGGKTVGAGVIQ I+E
Sbjct:  324 KVGEIVDIVGLKDTRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFEALVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTVIMSDKGEESKMVMPGDRVNMVVELIMPVACEQGMRFAIREGGKTVGAGVIQKILE 485          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_TOBAC (Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.012e-78
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            R+G+TVD+VGLK+TR+ TVTGVEMFQK LDEAMAGDNVGLLLRG+QK DIQRGMVLAKPGTITPHTKF AIVYVLKKEEGGRHSPFF+GYRPQFYMRTTDVTG+V+SI  DK EESKMVMPGDRV +VVELIMPVACEQGMRFAIREGGKTVGAGVIQ IIE
Sbjct:  317 RIGDTVDIVGLKDTRSTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTSITTDKGEESKMVMPGDRVNLVVELIMPVACEQGMRFAIREGGKTVGAGVIQKIIE 478          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_PEA (Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.012e-78
Identity = 144/162 (88.89%), Postives = 155/162 (95.68%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ VDLVGL+ETRN TVTGVEMFQK LD+AMAGDNVGLLLRG+QK DIQRGMVLAKPGTITPH+KF AIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTG+V+SIMNDKDEESKMVMPGDRVK+VVELI+PVA EQGMRFAIREGGKTVGAGVI +IIE
Sbjct:  327 KVGDVVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKIVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE 488          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTUA_NICSY (Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 8.012e-78
Identity = 143/162 (88.27%), Postives = 153/162 (94.44%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            R+G+TVD+VGLK+TR+ TVTGVEMFQK LDEAMAGDNVGLLLRG+QK DIQRGMVLAKPGTITPHTKF AIVYVLKKEEGGRHSPFF+GYRPQFYMRTTDVTG+V+SI  DK EESKMVMPGDRV +VVELIMPVACEQGMRFAIREGGKTVGAGVIQ IIE
Sbjct:  317 RIGDTVDIVGLKDTRSTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTSITTDKGEESKMVMPGDRVNLVVELIMPVACEQGMRFAIREGGKTVGAGVIQKIIE 478          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.418e-66
Identity = 115/161 (71.43%), Postives = 145/161 (90.06%), Query Frame = -3
Query:  217 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 699
            +VGET+++VGL+ETR  TVTG+EMFQKTL+E++AGDNVG+LLRG+QK DIQRGMVLAKPG+ITPHTKF A VY+L ++EGGRH+PFFAGYRPQFY+RTTDVTG++ +   D D+ ++MVMPGDR+KM VELI P+A E+GMRFAIREGG+TVGAGV+ +I+
Sbjct:  248 KVGETIEIVGLRETRTTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKIDIQRGMVLAKPGSITPHTKFTAQVYILTRDEGGRHTPFFAGYRPQFYVRTTDVTGKIETFRTDDDQPTQMVMPGDRIKMEVELIQPIAIEKGMRFAIREGGRTVGAGVVSAIV 408          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_SYNP6 (Elongation factor Tu OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tuf PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.387e-66
Identity = 117/162 (72.22%), Postives = 142/162 (87.65%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGET+++VGL++TR+ TVTGVEMFQKTLDE +AGDNVGLLLRG+QK DI+RGMVLAKPG+ITPHTKF + VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG +S    D    ++MV+PGDR+KM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  248 KVGETIEIVGLRDTRSTTVTGVEMFQKTLDEGLAGDNVGLLLRGIQKTDIERGMVLAKPGSITPHTKFESEVYVLKKEEGGRHTPFFPGYRPQFYVRTTDVTGAISDFTADDGSAAEMVIPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILQ 409          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.387e-66
Identity = 120/162 (74.07%), Postives = 142/162 (87.65%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGETV+LVGL+ETR+ TVTG+EMFQKTLDE +AGDNVG+LLRG+QK +++RGMVLAKP TITPHT F + VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG +SS   D   + +MVMPGDRVKM VELI P+A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  248 KVGETVELVGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITPHTNFESEVYVLKKEEGGRHTPFFAGYRPQFYVRTTDVTGTISSFTADDGSQPEMVMPGDRVKMTVELIQPIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
The following BLAST results are available for this feature:
BLAST of CN181842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_SOYBN3.475e-8192.59Elongation factor Tu, chloroplastic OS=Glycine max... [more]
EFTU2_SOYBN1.011e-8090.74Elongation factor Tu, chloroplastic OS=Glycine max... [more]
EFTU_ARATH1.460e-7988.89Elongation factor Tu, chloroplastic OS=Arabidopsis... [more]
EFTUB_NICSY3.596e-7888.89Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]
EFTU_TOBAC8.012e-7888.27Elongation factor Tu, chloroplastic OS=Nicotiana t... [more]
EFTU_PEA8.012e-7888.89Elongation factor Tu, chloroplastic OS=Pisum sativ... [more]
EFTUA_NICSY8.012e-7888.27Elongation factor TuA, chloroplastic OS=Nicotiana ... [more]
EFTU_LEPTE2.418e-6671.43Elongation factor Tu, chloroplastic OS=Leptosira t... [more]
EFTU_SYNP65.387e-6672.22Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNJB5.387e-6674.07Elongation factor Tu OS=Synechococcus sp. GN=tuf P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001J01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181842 ID=CN181842; Name=CN181842; organism=Citrus sinensis; type=EST; length=701bp
GGTCATATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAG
TTCAATGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTG
GAAGTTCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAA
GTTTAACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTT
CCTAGTACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTC
TTTCCTCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGG
CATAATAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCT
TGGACTCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACA
TCAGTGGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGA
GTGCCTACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACT
TAGTATGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGA
ATATCAGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGC
CATTGCCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGA
AATTCCTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCCACCCTA
A
back to top