CN181839

Overview
NameCN181839
Unique NameCN181839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AAT3_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.352e-60
Identity = 113/130 (86.92%), Postives = 120/130 (92.31%), Query Frame = 3
Query:    3 GRVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 392
            GRVESQLKLVIRPMYSSPPIHGASIVA IL+D  ++ EWTLELKAMADRIISMR+QLF+AL  RGTPGDWSHIIKQIGMFTFTGLN  QV+FMTKEYHIYMTSDGRISMAGLSSKTVPHL DAIHA VT+
Sbjct:  318 GRVESQLKLVIRPMYSSPPIHGASIVAVILRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPGDWSHIIKQIGMFTFTGLNPAQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAVVTK 447          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AAT2_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.352e-60
Identity = 112/131 (85.50%), Postives = 121/131 (92.37%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 398
            +VESQ+KLV+RPMYSSPPIHGASIVATILK S MY  WT+ELK MADRI SMRQQLF+A+ ARGTPGDWSHIIKQIGMFTFTGLN EQV FMTKE+HIYMTSDGRISMAGLSSKTVPHL DA+HAAVTR+G
Sbjct:  275 KVESQVKLVVRPMYSSPPIHGASIVATILKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPGDWSHIIKQIGMFTFTGLNKEQVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAMHAAVTRLG 405          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AATC_ORYSJ (Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.072e-60
Identity = 112/130 (86.15%), Postives = 121/130 (93.08%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 395
            RVESQLKLVIRPMYS+PPIHGASIVATILKDS M+ EWT+ELK MADRIISMRQQLFDAL  R TPGDWSHIIKQIGMFTFTGLNS+QVAFM +EYHIYMTSDGRISMAGLS +T+PHL DAIHAAVT++
Sbjct:  277 RVESQLKLVIRPMYSNPPIHGASIVATILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSDQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKL 406          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.240e-60
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 389
            +VESQLKLVIRPMYSSPP+HGASIVA ILKD  +Y EWTLELKAMADRIISMRQ+LF+AL A+GTPGDWSHI+KQIGMFTFTGLNSEQV FMT EYHIY+TSDGRISMAGLSS+TVPHL DAIHAAVT
Sbjct:  275 KVESQLKLVIRPMYSSPPLHGASIVAAILKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPGDWSHIVKQIGMFTFTGLNSEQVTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAIHAAVT 402          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.167e-59
Identity = 112/130 (86.15%), Postives = 120/130 (92.31%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 395
            RVESQLKLVIRPMYSSPPIHGASIVA ILKD  +Y +WT+ELKAMADRII+MRQQLFDAL ARGTPGDWSHIIKQIGMFTFTGLN EQV+ +TKEYHIY+TSDGRISMAGLSSKTVPHL  AIHA VTR+
Sbjct:  288 RVESQLKLVIRPMYSSPPIHGASIVAAILKDRDLYNDWTIELKAMADRIINMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGLNPEQVSILTKEYHIYLTSDGRISMAGLSSKTVPHLAHAIHAVVTRV 417          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AAT4_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 2 OS=Arabidopsis thaliana GN=ASP4 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 102/130 (78.46%), Postives = 113/130 (86.92%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 395
            +VE+Q+ LV+RPMY +PPIHGASIVATILK+S MY +WT+ELK MADRIISMRQQL+ AL ARGTPGDWSHIIK IGMFTFTGL+ EQV  M KEYHIYMT DGRISMA LSSKTVP L DAIHA VTR+
Sbjct:  273 KVENQVLLVVRPMYLTPPIHGASIVATILKNSDMYNDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTFTGLSEEQVRLMAKEYHIYMTYDGRISMASLSSKTVPQLADAIHAVVTRI 402          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.420e-35
Identity = 74/124 (59.68%), Postives = 91/124 (73.39%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 377
            RVESQLK++IRPMYS+PPI+GA I +TIL    + K+W  E+K MADRIISMR QL   L   G+  +W HII QIGMF +TGL  EQV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH
Sbjct:  303 RVESQLKILIRPMYSNPPINGARIASTILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIIDQIGMFCYTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHAIH 426          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AATM_DICDI (Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.467e-35
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 3
Query:    9 VESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 392
            VESQLK++IRPMYS+PP++GA +V  ILKD  +  EW  E+K MADRII+MR+QL   L   G+  DWSHI  QIGMF FTGL  EQV  +  EYHIY+T +GRIS+AG++S  V +L  A+ AAVT+
Sbjct:  298 VESQLKILIRPMYSNPPVYGARLVQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAM-AAVTK 424          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AATM_CHICK (Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.619e-35
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 377
            RVESQLK++IRPMYS+PP++GA I + IL    + KEW +E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  EQV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH
Sbjct:  296 RVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIH 419          
BLAST of CN181839 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.300e-34
Identity = 72/124 (58.06%), Postives = 90/124 (72.58%), Query Frame = 3
Query:    6 RVESQLKLVIRPMYSSPPIHGASIVATILKDSTMYKEWTLELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 377
            RVESQLK++IRP+YS+PP++GA I ATIL    + K+W  E+K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  EQV  +TKE+ +YMT DGRIS+AG++S  V +L  AIH
Sbjct:  303 RVESQLKILIRPLYSNPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAIH 426          
The following BLAST results are available for this feature:
BLAST of CN181839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AAT3_ARATH2.352e-6086.92Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AAT2_ARATH2.352e-6085.50Aspartate aminotransferase, cytoplasmic isozyme 1 ... [more]
AATC_ORYSJ3.072e-6086.15Aspartate aminotransferase, cytoplasmic OS=Oryza s... [more]
AATC_DAUCA5.240e-6086.72Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AAT1_MEDSA1.167e-5986.15Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
AAT4_ARATH1.250e-5378.46Aspartate aminotransferase, cytoplasmic isozyme 2 ... [more]
AATM_BOVIN3.420e-3559.68Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATM_DICDI4.467e-3557.81Aspartate aminotransferase, mitochondrial OS=Dicty... [more]
AATM_CHICK7.619e-3558.87Aspartate aminotransferase, mitochondrial OS=Gallu... [more]
AATM_RAT1.300e-3458.06Aspartate aminotransferase, mitochondrial OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181839 ID=CN181839; Name=CN181839; organism=Citrus sinensis; type=EST; length=670bp
GAGGCAGGGTTGAAAGCCAGTTGAAACTCGTGATTAGGCCCATGTACTCT
AGTCCACCTATTCACGGGGCCTCTATTGTGGCTACAATTCTCAAGGACAG
CACTATGTATAAAGAGTGGACTCTTGAACTGAAAGCGATGGCTGACCGGA
TTATAAGCATGCGTCAGCAACTATTTGATGCTCTGTCTGCTAGAGGCACT
CCAGGAGACTGGAGTCACATTATCAAGCAAATAGGAATGTTTACATTCAC
AGGGCTGAACAGTGAACAAGTTGCCTTCATGACCAAGGAGTATCACATTT
ATATGACATCTGATGGGAGGATTAGCATGGCAGGTCTTAGTTCAAAGACA
GTTCCTCATCTTACCGATGCTATACATGCTGCTGTAACCCGAATGGGCTA
AGATTAATCAGACAAGAATTCATGCCGTAAGAATTGTTTGGTTTTCAGTC
ACCCTCAGCAATGCAAAAATGAGTTTGTAGAACTAGAAAATGCATAAATA
AAGGTTTTACATTAAGAAAATTTTGTTCTTTTGGTTTTGGTGTTGTATTC
TTGTCTTTCCACCAAAACTTGACATGTTTATTAAGTAGAAGAAAAACGAA
AGTTGCGATGTTATTTATTTTTGCATTTATCTTTGGGGAGATGCCATTTA
CATTTTTAACTCTCCTTGAA
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