CN181834

Overview
NameCN181834
Unique NameCN181834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:615..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.779e-46
Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            LV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER+FE+F ES++EDLIKDA+MAIRETLQGETLKSS+CTV+V+G  EPFH LDQE++QK+ID+FE
Sbjct:  133 LVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFE 236          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 5.779e-46
Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            LV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE+F +S+REDLIKDA++A+RETLQGETLKSS+CTVA++G  EPFH LDQE +QK+ID+FE
Sbjct:  133 LVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFE 236          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  359 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV-----GAGEPFHILDQETVQKLIDSFEIA 676
            LVAGLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERRFE +++ T E LIKDAL AI+ETLQGE L SS CTVA+V     G  EPF ++D + +Q++IDS E A
Sbjct:  133 LVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSMEAA 243          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.809e-23
Identity = 51/106 (48.11%), Postives = 74/106 (69.81%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG--ETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            LVAG D+ GAH+Y  CPSGN+++Y++ +IGSRSQ+AKTYLE+ FE+F E T E LI   L A+RET+    +TL S   ++ +VG G+PF I+++   Q  ++  E
Sbjct:  133 LVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLNLLE 238          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = -2
Query:  362 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 676
            L+AG D  G HLY+  PSG+ F+++A A+G RSQAA+TYLE+ FE+F +   ++LI  AL A+   T  G  L     T+A+VG G PF +L +E  +K +D F++
Sbjct:  134 LIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGAELNIKNTTIAIVGKGTPFMVLTEEAARKYLDGFKM 239          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E   ++L+K  L A+RETL  E  L +   ++ +VG    F I D + V   +D  E
Sbjct:  133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F +   ++L+K  L A+RETL  E  L +   ++ +VG    F I D + V   +D  E
Sbjct:  133 LIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
The following BLAST results are available for this feature:
BLAST of CN181834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSA1B_ARATH5.779e-4682.69Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1A_ARATH5.779e-4681.73Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA1_ORYSJ4.904e-3770.27Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA1_DICDI1.809e-2348.11Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA1_TRYCR6.022e-1944.34Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_MOUSE5.098e-1841.90Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_RAT1.483e-1740.95Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1_MACFA2.530e-1740.95Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN2.530e-1740.95Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN2.530e-1740.95Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181834 ID=CN181834; Name=CN181834; organism=Citrus sinensis; type=EST; length=677bp
CGCTCACTGTATCTAAAGTGTTAAAGCAAGATGTTTGGAGTTTAGGAAAG
GATACTATTAAAATGTTTGTACTGATAAGGCAAGATAATTTGCACCATAA
GCGGAAAAATAAATTGTCCAACAGAATGATTTCCCGAAGTGCAACCCATA
TTCCATGGAACCCATCAAACACATGCTTAAACTCCTCATCTAAAGACGAA
GACGAAGAAGCTGACTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGC
TACACCCTCGCCTGCTGGAGCACCTTGTTCTGAAGCTGCGCCTCCTTCTG
CAGCACTGCCTCCTTCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCT
TCAGTGCCAGCAATCTCAAATGAATCAATTAACTTTTGTACGGTTTCTTG
ATCTAAAATATGAAATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAA
TAGAACTCTTTAGTGTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGA
GCGTCCTTGATCAGATCTTCTCTTGTAGATTCTGAAAAGTTCTCAAACCT
GCGTTCCAAGTATGTCTTTGCAGCTTGAGATCGGGACCCAATGGCAAATG
CTTGATACTCAAAATAGTTCCCACTTGGGCAGTTATAATAAAGGTGGGCT
CCTTTTTCATCCAAGCCAGCAACCAGC
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