CN181834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 5.779e-46 Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 LV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER+FE+F ES++EDLIKDA+MAIRETLQGETLKSS+CTV+V+G EPFH LDQE++QK+ID+FE Sbjct: 133 LVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFE 236
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3) HSP 1 Score: 184.111 bits (466), Expect = 5.779e-46 Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 LV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE+F +S+REDLIKDA++A+RETLQGETLKSS+CTVA++G EPFH LDQE +QK+ID+FE Sbjct: 133 LVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFE 236
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37 Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = -2 Query: 359 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV-----GAGEPFHILDQETVQKLIDSFEIA 676 LVAGLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERRFE +++ T E LIKDAL AI+ETLQGE L SS CTVA+V G EPF ++D + +Q++IDS E A Sbjct: 133 LVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSMEAA 243
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.809e-23 Identity = 51/106 (48.11%), Postives = 74/106 (69.81%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG--ETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 LVAG D+ GAH+Y CPSGN+++Y++ +IGSRSQ+AKTYLE+ FE+F E T E LI L A+RET+ +TL S ++ +VG G+PF I+++ Q ++ E Sbjct: 133 LVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLNLLE 238
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = -2 Query: 362 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 676 L+AG D G HLY+ PSG+ F+++A A+G RSQAA+TYLE+ FE+F + ++LI AL A+ T G L T+A+VG G PF +L +E +K +D F++ Sbjct: 134 LIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGAELNIKNTTIAIVGKGTPFMVLTEEAARKYLDGFKM 239
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 L+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E ++L+K L A+RETL E L + ++ +VG F I D + V +D E Sbjct: 133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17 Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 L+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F + ++L+K L A+RETL E L + ++ +VG F I D + V +D E Sbjct: 133 LIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17 Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 L+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17 Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 L+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17 Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676 L+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I D + V ++ E Sbjct: 133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237 The following BLAST results are available for this feature:
BLAST of CN181834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN181834 ID=CN181834; Name=CN181834; organism=Citrus sinensis; type=EST; length=677bpback to top |