CN181831

Overview
NameCN181831
Unique NameCN181831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:46..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.178e-79
Identity = 155/217 (71.43%), Postives = 173/217 (79.72%), Query Frame = 1
Query:   76 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIA 723
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPSTAQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIG VIAVGPG LDEEG   PL ++
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVS 217          

HSP 2 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELE-FNGANHLILREDDVVGIL 528
            +KPL DRV +K+   EEKT GG+ L  T + KP  G V+AVG G    + K+  + V  G+ V+YSKYAG + +  +G+N++ LR  DV+ IL
Sbjct:  160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAIL 252          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.398e-64
Identity = 126/219 (57.53%), Postives = 160/219 (73.06%), Query Frame = 1
Query:   76 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAPSQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSI 720
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+ AQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS G V+A GPG LDEEGNR PL +
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPV 218          

HSP 2 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELE-FNGANHLILREDDVVGIL 528
            +KPL DR+L+K+  VE KT GG+ L  +++ KP  G VVA G G    +  ++ + V  G  V+YSKYAG + +  +G+++++LR  DV+ +L
Sbjct:  162 LKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVL 254          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDE 540
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ G V+AVG G+    TK+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  253 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  253 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  253 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            ++KPL DRVLVK    EEKT GG+++P TA+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  253 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 528
            +IKPLGDRV++K   +EEKT  GI +P TA+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LIL+E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CN181831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10C_ARATH1.178e-7971.4320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL1.398e-6457.5320 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_RHOMR3.484e-2350.5310 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEPX5.943e-2354.3510 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP35.943e-2354.3510 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR5.943e-2354.3510 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_NATTJ2.258e-2252.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_DESVV6.571e-2253.1910 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH10_DESVH6.571e-2253.1910 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESHY6.571e-2253.2610 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181831 ID=CN181831; Name=CN181831; organism=Citrus sinensis; type=EST; length=725bp
GAGGTCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCT
CTCTCGCTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGT
CATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGA
CCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTC
TTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGA
AGACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCG
AAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATT
GAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATC
TTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAG
ACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTC
CATTGGAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTA
ATAGGAAACCTCTATCCATTGCTCC
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