CN181830

Overview
NameCN181830
Unique NameCN181830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:303..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 1.547e-81
Identity = 150/192 (78.12%), Postives = 169/192 (88.02%), Query Frame = -2
Query:  123 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 698
            IKPLGDR LVKIK  EEKT GGI LPSTAQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLIL+EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIG VIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIALRAS+VMA+LS
Sbjct:   62 IKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.091e-74
Identity = 131/192 (68.23%), Postives = 160/192 (83.33%), Query Frame = -2
Query:  123 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 698
            +KPLGDR L+K K VEEKT  GIFLP+ AQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLI++EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS G V+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+ LR S+VMAVLS
Sbjct:   64 VKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255          

HSP 2 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  126 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 428
            + T +   +KPL DRV IK    EE T  G+ L  A+++KP  G V+A+G G   + G++K P+++  G  V+YSKY G + +  DG++++ ++  +++ +L
Sbjct:   56 ITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSG--KKVGDKKLPVAVKTGAEVVYSKYTGTEIE-VDGSSHLIVKEDDIIGIL 154          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 47/95 (49.47%), Postives = 71/95 (74.74%), Query Frame = -2
Query:  414 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDE 698
            IKPL DR ++K +  EEKT+ G+++P TA+ KPQ G V+AVG G+    TK+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          

HSP 2 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL+DRV IK    EE T  GL + + +KEKP  G VIAVGPG + E G +  +S+  G+ V+Y KYAG +    DG  Y+ +R ++++ ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRV-ENGTKIEMSVKEGDKVLYGKYAGTEIT-IDGEEYLIMRETDILGII 96          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = -2
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            +KPLGDR +VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = -2
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            +KPLGDR +VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = -2
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            +KPLGDR +VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  126 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 413
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          

HSP 2 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -2
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPLGDR  VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++  G ++++L E D++ I+
Sbjct:   11 VKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  126 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 413
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          

HSP 2 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -2
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPLGDR  VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++  G ++++L E D++ I+
Sbjct:   11 VKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 49/93 (52.69%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            +KPLGDR ++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    3 LKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          

HSP 2 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  126 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 407
            +LKPL DR+ IK+ EAEE T  G++L E +KEKP  G V+AVG G   ++G++    +  G+ V+YSK+AGN+ +  DG  Y+ +R  +++AV+
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVE-VDGEEYLIMRQDDILAVI 94          
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 48/92 (52.17%), Postives = 68/92 (73.91%), Query Frame = -2
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            +KPLGDR +VK+   EE T GG+ LP TA+ KPQ GEVVAVG G+ +   +++  VK G +VI+SKYAGTE++ +G  +L+LRE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            LKPL DRV +KV ++EE T GG++L   +KEKP  G V+AVGPG    +G R    +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQY-IDGKRVEPEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
The following BLAST results are available for this feature:
BLAST of CN181830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10C_ARATH1.547e-8178.1320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL9.091e-7468.2320 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_RHOMR2.125e-2249.4710 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEPX3.625e-2253.2610 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP33.625e-2253.2610 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR3.625e-2253.2610 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_THEVL1.799e-2147.9210 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB1.799e-2147.9210 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_NATTJ1.799e-2152.6910 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_THETN5.234e-2152.1710 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181830 ID=CN181830; Name=CN181830; organism=Citrus sinensis; type=EST; length=699bp
GCTGCAATTCTTTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCT
TGAGGCAACTCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCG
CTCAAGTAAACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCT
CTTAAAGCAATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGC
ATACTTGGAATACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCC
TATTACCTTCCTCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCA
ATGGAAGGTTTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGT
TGTCTCCTCAGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCT
TAAGATCCTTGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCC
CTCAATATGAGATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATA
CTTCGAATAGATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAG
TCTTCCCAACTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGA
GGCTTTGTTTGAGCTGTAGATGGCAGAAAAATACCACCATCAGTTTTCTC
CTCTACAGTCTTGATTTTCACCAACCCTCTATCACCCAAAGGTTTAATT
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