CN181822

Overview
NameCN181822
Unique NameCN181822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2947 contig Csv1_Contig2947:568..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181822 vs. ExPASy Swiss-Prot
Match: CB029_RAT (UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.190e-20
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 3 
Query:  174 PPRFPVLDRELEWLIP-DNNHELLWDHGMCADTNTGAAFRDLIAKTLKGPLLPAQYEQVVVELANDPELVYHCGLTLRKLPELVENNPLIAVDVLTKLI 467
            PP   + + EL WL P +  H + WD  MC   +TG   + ++AK  K PL   Q  Q++ EL  DP+LVYH GLT  KLP+LVENNPL+A+++L KL+
Sbjct:  282 PPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLM 380
[Close]
BLAST of CN181822 vs. ExPASy Swiss-Prot
Match: CB029_MOUSE (UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.190e-20
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 3 
Query:  174 PPRFPVLDRELEWLIP-DNNHELLWDHGMCADTNTGAAFRDLIAKTLKGPLLPAQYEQVVVELANDPELVYHCGLTLRKLPELVENNPLIAVDVLTKLI 467
            PP   + + EL WL P +  H + WD  MC   +TG   + ++AK  K PL   Q  Q++ EL  DP+LVYH GLT  KLP+LVENNPL+A+++L KL+
Sbjct:  283 PPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLM 381
[Close]
BLAST of CN181822 vs. ExPASy Swiss-Prot
Match: CB029_HUMAN (UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.190e-20
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 3 
Query:  174 PPRFPVLDRELEWLIP-DNNHELLWDHGMCADTNTGAAFRDLIAKTLKGPLLPAQYEQVVVELANDPELVYHCGLTLRKLPELVENNPLIAVDVLTKLI 467
            PP   + + EL WL P + +H + WD  MC   +TG   + ++AK  K PL   Q  Q++ EL  DP+LVYH GLT  KLP+LVENNPL+A+++L KL+
Sbjct:  288 PPPLHICEDELAWLNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLM 386
[Close]
BLAST of CN181822 vs. ExPASy Swiss-Prot
Match: CB029_DANRE (UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 3 
Query:  168 PLPPRFPVLDRELEWLIP-DNNHELLWDHGMCADTNTGAAFRDLIAKTLKGPLLPAQYEQVVVELANDPELVYHCGLTLRKLPELVENNPLIAVDVLTKLIN 470
            P PP   V + EL WL P +  H + WD  MC    TG   + ++AK  K PL  AQ  Q++ EL  D +LVYH GLT  KLP+LVENNPL+A+++L KL++
Sbjct:  222 PTPPLL-VCEDELCWLNPCEPEHRVQWDRSMCVRNGTGVEIKRIMAKAFKSPLSAAQQTQLLGELEKDLKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMS 322
The following BLAST results are available for this feature:
BLAST of CN181822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB029_RAT3.190e-2046.46UPF0760 protein C2orf29 homolog OS=Rattus norvegic... [more]
CB029_MOUSE3.190e-2046.46UPF0760 protein C2orf29 homolog OS=Mus musculus GN... [more]
CB029_HUMAN3.190e-2046.46UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29... [more]
CB029_DANRE7.858e-1947.06UPF0760 protein C2orf29 homolog OS=Danio rerio GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181822 ID=CN181822; Name=CN181822; organism=Citrus sinensis; type=EST; length=470bp
GAGGCCCAGACCCTGATTTGCCACATGGATGTGATCCACATTCACCACAG
GTTGACTTCCAACCTGGAGCCAAAACTAAACTTGGAGCTGGTATGACAGA
TGAAACTGTAACAGGATTGTTGCACGCATCCTGTCATTGAAGGGATTGGA
TCCTCGGTGGATCATGGCCACTTCCACCGAGGTTCCCTGTGCTCGATAGG
GAGCTTGAGTGGCTCATACCTGACAACAATCATGAGCTTCTTTGGGATCA
CGGCATGTGTGCGGATACTAATACAGGAGCTGCATTTAGGGACTTGATTG
CCAAAACTTTGAAGGGACCTTTGCTGCCTGCGCAATATGAGCAAGTTGTG
GTGGAGTTGGCTAATGACCCAGAGCTAGTATATCACTGTGGACTGACGCT
CAGAAAACTACCGGAGTTGGTGGAAAACAATCCCCTCATTGCGGTTGATG
TCCTTACGAAGTTAATTAAT
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