CN181821

Overview
NameCN181821
Unique NameCN181821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2947 contig Csv1_Contig2947:1091..1575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181821 vs. ExPASy Swiss-Prot
Match: CB029_HUMAN (UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.087e-31
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = -3
Query:  212 LPLLVELPKEFVRMYITNCISSCQNIRDKYMQNRLVRMVCVFLQSLIRNRIIDVKDLFIEVQAFCIELSRIREAATLFRLVKTL 463
            L   V+LP EF+ +YI+NCIS+C+ I+DKYMQNRLVR+VCVFLQSLIRN+II+V+DLFIEVQAFCIE SRIREAA LFRL+KTL
Sbjct:  414 LTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 497          

HSP 2 Score: 22.7126 bits (47), Expect = 2.087e-31
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -2
Query:  453 SMEVVNRLTSA 485
            SMEVVNRLT+A
Sbjct:  407 SMEVVNRLTTA 417          
BLAST of CN181821 vs. ExPASy Swiss-Prot
Match: CB029_MOUSE (UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.088e-31
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = -3
Query:  212 LPLLVELPKEFVRMYITNCISSCQNIRDKYMQNRLVRMVCVFLQSLIRNRIIDVKDLFIEVQAFCIELSRIREAATLFRLVKTL 463
            L   V+LP EF+ +YI+NCIS+C+ I+DKYMQNRLVR+VCVFLQSLIRN+II+V+DLFIEVQAFCIE SRIREAA LFRL+KTL
Sbjct:  409 LTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 492          

HSP 2 Score: 22.7126 bits (47), Expect = 2.088e-31
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -2
Query:  453 SMEVVNRLTSA 485
            SMEVVNRLT+A
Sbjct:  402 SMEVVNRLTTA 412          
BLAST of CN181821 vs. ExPASy Swiss-Prot
Match: CB029_RAT (UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.088e-31
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = -3
Query:  212 LPLLVELPKEFVRMYITNCISSCQNIRDKYMQNRLVRMVCVFLQSLIRNRIIDVKDLFIEVQAFCIELSRIREAATLFRLVKTL 463
            L   V+LP EF+ +YI+NCIS+C+ I+DKYMQNRLVR+VCVFLQSLIRN+II+V+DLFIEVQAFCIE SRIREAA LFRL+KTL
Sbjct:  408 LTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 491          

HSP 2 Score: 22.7126 bits (47), Expect = 2.088e-31
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -2
Query:  453 SMEVVNRLTSA 485
            SMEVVNRLT+A
Sbjct:  401 SMEVVNRLTTA 411          
BLAST of CN181821 vs. ExPASy Swiss-Prot
Match: CB029_DANRE (UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.091e-31
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = -3
Query:  212 LPLLVELPKEFVRMYITNCISSCQNIRDKYMQNRLVRMVCVFLQSLIRNRIIDVKDLFIEVQAFCIELSRIREAATLFRLVKTL 463
            L   V+LP EF+ +YI+NCIS+C+ I+DKYMQNRLVR+VCVFLQSLIRN+II+V+DLFIEVQAFCIE SRIREAA LFRL+KTL
Sbjct:  349 LTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 432          

HSP 2 Score: 22.7126 bits (47), Expect = 2.091e-31
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -2
Query:  453 SMEVVNRLTSA 485
            SMEVVNRLT+A
Sbjct:  342 SMEVVNRLTTA 352          
BLAST of CN181821 vs. ExPASy Swiss-Prot
Match: CB029_DICDI (UPF0760 protein DDB_G0279005 OS=Dictyostelium discoideum GN=DDB_G0279005 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.923e-24
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  221 VELPKEFVRMYITNCISSCQNIRDKYMQNRLVRMVCVFLQSLIRNRIIDVKDLFIEVQAFCIELSRIREAATLFRLV 451
            V+LP  F+ MYITNCI SC NI+DK MQ R VR+VCVF+QSLIRN II++K+LF EVQ FC+E S+IREA +LF+ +
Sbjct:  510 VDLPPHFIPMYITNCIDSCNNIKDKAMQQRSVRLVCVFIQSLIRNNIINIKNLFCEVQTFCLEFSKIREAISLFKAI 586          
The following BLAST results are available for this feature:
BLAST of CN181821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CB029_HUMAN2.087e-3176.19UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29... [more]
CB029_MOUSE2.088e-3176.19UPF0760 protein C2orf29 homolog OS=Mus musculus GN... [more]
CB029_RAT2.088e-3176.19UPF0760 protein C2orf29 homolog OS=Rattus norvegic... [more]
CB029_DANRE2.091e-3176.19UPF0760 protein C2orf29 homolog OS=Danio rerio GN=... [more]
CB029_DICDI3.923e-2464.94UPF0760 protein DDB_G0279005 OS=Dictyostelium disc... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001I11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181821 ID=CN181821; Name=CN181821; organism=Citrus sinensis; type=EST; length=486bp
AAGTTAAATTATCCCTTATTGTTTCCACATCGAAGGGTACCTAACTTTTC
ATAGGCAAGGCAACATTATAGGAGATCTATCATATCTGAAAGTGCGAATA
AAAATTGTTACTATCTACAAAGCAGAGAAGATTTACAAATGATACTACAC
CGGAGAGAGAATCGCTCGAGACAGGACTGTCTATGAATTCAGGGTTCATT
CATTCCAAACCCAAGGTTTTAACAAGCCTGAATAATGTTGCAGCTTCTCT
AATTCTTGACAATTCTATGCAAAAGGCTTGGACTTCGATGAATAGATCCT
TAACATCAATTATTCTGTTTCGGATTAGACTCTGTAAGAAAACACATACC
ATTCGTACAAGTCTGTTCTGCATGTACTTATCCCTGATGTTCTGACAGGA
GGATATACAGTTAGTTATGTACATGCGAACAAATTCTTTTGGAAGTTCTA
CAAGCAGAGGTAAGCCGGTTCACTACTTCCATTGAA
back to top