CN181820

Overview
NameCN181820
Unique NameCN181820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:38..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.572e-24
Identity = 68/155 (43.87%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  199 CLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--DLFTCCG 645
            CLL LG   S+              H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+  DL TCCG
Sbjct:   10 CLLALGDARSRP-----------SFHPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG 143          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.292e-23
Identity = 62/130 (47.69%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  274 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--DLFTCCG 645
            H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+  DL TCCG
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDVSYLKKLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG 143          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.758e-23
Identity = 61/130 (46.92%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  274 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--DLFTCCG 645
            H L D ++  VN+     W+A  N  F N  +   K L G         LG P         + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+  DL TCCG
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG 143          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.372e-23
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  208 ILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLFTCC 642
            IL + S  TF E  +S        L D II  +NE+P AGW+A ++ +F  +++   +  +G +     L       V  +D ++++P +FD+R  WP C +I+ I DQ  CGSCW+FGAVEA+SDR CI  G   N+ LS  DL TCC
Sbjct:    5 ILCIASLITFLEAHISVKNEKFEPLSDDIISYINEHPNAGWRAEKSNRF--HSLDDARIQMGARREEPDLRRKRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCC 151          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.372e-23
Identity = 57/147 (38.78%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  217 VISSQTFAEG-VVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF--GMNLSLSVNDLFTCC 642
            ++S  TF E  V ++       L D +I  +NE+P AGWKA ++ +F  +++   + L+G +     +       V  HD ++++P  FD+R  WP C +IS+I DQ  CGSCWAFGAVEA++DR CI    G +  LS  DL +CC
Sbjct:    8 IVSLFTFLEAHVTTRNNQRIEPLSDEMISFINEHPDAGWKADKSDRF--HSLDDARILMGARKEDAEMKRNRRPTVDHHDLNVEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLISCC 152          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.372e-23
Identity = 60/134 (44.78%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  262 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLFTCCG 645
            K  SH L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP+SFDAR  W  C TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S  DL TCCG
Sbjct:   20 KPSSHPLSDDMINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPNLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCG 143          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.579e-21
Identity = 66/160 (41.25%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  184 LFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVK----THDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLFTCCG 645
            L L +CLL L      T A       K   H L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP++FDAR  W  C TI +I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S  DL TCCG
Sbjct:    5 LILLSCLLAL------TSAHD-----KPSFHPLSDDLINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPKLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCG 143          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 102.064 bits (253), Expect = 2.693e-21
Identity = 57/127 (44.88%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  280 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK---SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLFTCCG 645
            L D ++  VN+     WKA  N  F N  +   K L G       +L G  +   D     + LP+SFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S  D+ TCCG
Sbjct:   26 LSDELVNFVNKQ-NTTWKAGHN--FYNVDLSYVKKLCGA------ILGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCG 143          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 62/173 (35.84%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  184 LFLTTCLLILGVISSQTFAEGVVSKLK---LDSHILQ---DSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVP------------VKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNDLFTCC 642
            L   +C+++    +     E V+ K +   +DS   +   D +I  VNEN    W A +  +FS+        + G     K  L+GV              KT D  L +P+SFD+R  WP+C +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LS +DL +CC
Sbjct:    4 LLFLSCIVVAAYCACNDNLESVLDKYRNREIDSEAAELDGDDLIDYVNENQNL-WTAKKQRRFSS--------VYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCC 167          
BLAST of CN181820 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.478e-19
Identity = 55/128 (42.97%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  280 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLK----LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLFTCCG 645
            L D ++  +N+     W A  N  F N  +   K L G         LG P      +      LPKSFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S  D+ TCCG
Sbjct:   26 LSDELVNFINKQ-NTTWTAGHN--FYNVDLSYVKKLCGT-------FLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCG 143          
The following BLAST results are available for this feature:
BLAST of CN181820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CATB_MACFA7.572e-2443.87Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_PONAB1.292e-2347.69Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_HUMAN3.758e-2346.92Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CYSP_SCHMA8.372e-2339.60Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CYSP_SCHJA8.372e-2338.78Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_RAT8.372e-2344.78Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_MOUSE1.579e-2141.25Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_BOVIN2.693e-2144.88Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CPR6_CAEEL2.977e-2035.84Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CATB_PIG1.478e-1942.97Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181820 ID=CN181820; Name=CN181820; organism=Citrus sinensis; type=EST; length=648bp
GAGGCTGAATTCCGAGAGTTCTCCCTCTATTATTGGACTTTGTCATTATT
TTAATTAACCTAATCCTCTTGCTTCCCAATAAGAAGGGGCCCGGGGGGTT
GGCTCACAACACAAGAAAAGTGCTCTCTCCCATTTCTCCTCTCTTCGTCC
TTCCCGAGCCAGTCATCCATGGCTTCATCTCACCTCTTTCTTACTACATG
TTTGTTAATTCTTGGCGTTATCTCCTCCCAGACTTTTGCAGAGGGAGTGG
TTTCCAAGCTCAAGCTTGATTCTCATATTCTCCAGGATTCAATCATCAAA
GAAGTGAATGAGAACCCTAAGGCTGGATGGAAAGCTGCCAGAAATCCTCA
ATTTTCCAATTACACTGTTGGGCAATTTAAGCACCTTCTTGGAGTCAAGC
CAACACCTAAAGGGCTGCTCTTGGGTGTCCCTGTTAAAACTCATGACAAA
TCCTTGAAGTTGCCTAAAAGCTTTGATGCAAGGTCCGCTTGGCCACAATG
CAGCACCATTAGTAGGATCCTAGATCAGGGCCATTGTGGTTCTTGTTGGG
CTTTTGGTGCTGTTGAAGCGCTATCTGATCGTTTCTGCATCCATTTTGGC
ATGAACCTATCTCTATCAGTTAATGATCTTTTTACCTGCTGTGGCTTT
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