CN181817

Overview
NameCN181817
Unique NameCN181817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1242..1756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.916e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  333 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.916e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  333 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.916e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  333 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.916e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  333 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.916e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  333 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = -3 
Query:  334 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 513
            ILKIVKE+FDFRPGMM+INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  333 ILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  381 ILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 441
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.118e-29
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGMMTINLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  333 ILKIVKETFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.049e-29
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            IL+IVKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  334 ILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 394
[Close]
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.051e-28
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = -3 
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWE+VKPLKWEKPQ+
Sbjct:  333 ILKIVKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQS 393
The following BLAST results are available for this feature:
BLAST of CN181817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK_BRARP1.916e-3098.36S-adenosylmethionine synthetase OS=Brassica rapa s... [more]
METK5_BRAJU1.916e-3098.36S-adenosylmethionine synthetase 5 OS=Brassica junc... [more]
METK3_BRAJU1.916e-3098.36S-adenosylmethionine synthetase 3 OS=Brassica junc... [more]
METK1_BRAJU1.916e-3098.36S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK1_ARATH1.916e-3098.36S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]
METK1_SOLTU1.622e-2996.67S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK1_DAUCA1.622e-2995.08S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK2_ARATH2.118e-2995.08S-adenosylmethionine synthetase 2 OS=Arabidopsis t... [more]
METK_MEDTR8.049e-2993.44S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK2_ELAUM1.051e-2891.80S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181817 ID=CN181817; Name=CN181817; organism=Citrus sinensis; type=EST; length=515bp
TACAACTCGCTGCTGCCTTCATTCTACATTCCAAAAATAGTCGTAAGCAA
AAGGAAGAATTTTACTAATTCCAGGCACCAGTTGAGCAAAATTCTCAATC
GATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAAACCAAAA
AAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTAT
GAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGAT
AATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAG
GGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACT
TGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAG
TGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAG
ATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCA
CAATTTTGAGGATCT
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