CN181814

Overview
NameCN181814
Unique NameCN181814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.978e-34
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  101 LGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWS--KAAGLIPMSPPTVDEIRLSDRTCTSLFANVNCLLTKFYDISCGENLKLYILA 430
            LGGG  ADI+ WKN+  S  IL V T+IW LFE++EY FIT LC  L   +    IWS   ++ LI   PP+++++R+S+     LF  +N  + K YDIS G++ +L  LA
Sbjct:   26 LGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLA 137          

HSP 2 Score: 63.929 bits (154), Expect = 6.978e-34
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  418 LYSGFLCLETLPALYLRFQGEVDYLAAKSTQDMRRLFNDFNSKVLDKIPRASAKEKK 588
            LY  F+ LET+P LY +++ E+ Y A+KS +DM++L N FNSKV++KIP+A AK ++
Sbjct:  157 LYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKAQAKTRR 213          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.758e-29
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYIL 427
            LF  Q  +  I GGG VADILLW+   ++A +++ V+++W L E++EYNFITL+C+     M+  FIWS A+  +    P + E+ L +    +   S     N +LTK  D++CG +  L+ L
Sbjct:   23 LFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFL 146          

HSP 2 Score: 52.7582 bits (125), Expect = 7.758e-29
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  418 LYSGFLCLETLPALYLRFQGEVDYLAAKSTQDMRRLFNDFNSKVLDKIPRASAKEKKY 591
            L+ GF+ ++TLP +Y  ++ +VD  A K  + M++L+   ++ VL KIPR + K KK+
Sbjct:  167 LFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKKF 224          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.589e-22
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYIL 427
            LFG + PL  + GGG  ADI LW+N+ +S  +L   TV W+LFE+LEYN +TL  +     +  LF+WS A+  I  SP  + E+ + +    +  + L   +N   T   DI+ G +LK ++L
Sbjct:   48 LFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLL 171          

HSP 2 Score: 35.4242 bits (80), Expect = 2.589e-22
Identity = 14/48 (29.17%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  418 LYSGFLCLETLPALYLRFQGEVDYLAAKSTQDMRRLFNDFNSKVLDKI 561
            +Y   + L T+P LY +++ +VD    K+ +++++ + +F+ KVL K+
Sbjct:  192 IYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.257e-21
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYILA 430
            LF  Q P+  +LGGG  AD+LLW+N+ +SA++L+  T IW+LFE + ++F++L+CY L   MI  F+WS A+G +  S   V  + L          ++   VN  L    D++C  NLK +++A
Sbjct:   45 LFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMA 169          

HSP 2 Score: 31.9574 bits (71), Expect = 1.257e-21
Identity = 17/57 (29.82%), Postives = 25/57 (43.86%), Query Frame = 1
Query:  418 LYSGFLCLETLPALYLRFQGEVDYLAAKSTQDMRRLFNDFNSKVLDKIPRASAKEKK 588
            LY GF+   T+P LY R++ EVD             +   ++  L +IP      KK
Sbjct:  189 LYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKFGLKK 245          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 50/161 (31.06%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYILAFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTIS 538
            LFG + P+  +LGGG  ADI +WKN+ +S  +L   T  W++FE++EY+ +TLLC+ +  ++  LF+WS A   I  SPP + E+ + +    +  + L   +N   +   +I+ G +LK +++A               G W+   L +L  C   LT++
Sbjct:   73 LFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIA-------------GLWV---LSILGGCFNFLTLA 217          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 52/160 (32.50%), Postives = 84/160 (52.50%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYILAFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTI 535
            LFG + P+  +LGGG  ADI LW+N+ +S  +L  VT  W+LFE+ EY+ +  LC+F  F +  LF+WS A   I  S P + E+ + +    +  + L   +N  LT   +I+ G+++K +IL                G W+   L ++ +C   LT+
Sbjct:   52 LFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIA-------------GLWV---LSIIGSCYNFLTL 195          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 48/143 (33.57%), Postives = 81/143 (56.64%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSDR----TCTSLFANVNCLLTKFYDISCGENLKLYILAFCAWKHYRLCICDFKGRW 484
            LFG + P+  +LGGG  AD+ LW+++ LSA++L V T IW+LFE++EY+F++L+C+ L F +  LF+ S A   +  +PP + EI + +       ++L   +N        I+ G +LK +++       + L I    G W
Sbjct:   52 LFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVV-----FGLWIISVVGNW 189          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLKLYILAFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTIS 538
            LFG + P+  +LGGG  ADI +WK++ +S  +    TV W+LFE++EY+ +TLLC+ +   +  LF+WS A   I  SPP + E+ + +    +  + L   +N  ++   +I+ G ++K ++ A               G W+   L +L  C   LT++
Sbjct:   69 LFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIA-------------GLWV---LSILGGCYSFLTLA 213          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSDR----TCTSLFANVNCLLTKFYDISCGENLKLYILAFCAWKHYRLCICDFKGRW 484
            +FG + P+  +LGGG  AD+ LW+++ LS A+L V T IW+LFE++EY+ ++LLC+     +  LF+WS A  LI  + P + EI + +       +SL   +N        I+ G +LK +++         L I    G W
Sbjct:   52 MFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVG-----LWIISVVGNW 189          
BLAST of CN181814 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   68 LFGLQGPLLDILGGGTVADILLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSDRTCTS----LFANVNCLLTKFYDISCGENLKLY 421
            LF     + +ILGGG VAD++LW+ +N+S  I+ V    W++FE   Y   TL+   L  ++  LF+WSK+A ++    P + E ++S+         L  +VN LL   +DI+   + +LY
Sbjct:    8 LFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELY 129          
The following BLAST results are available for this feature:
BLAST of CN181814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RTNLN_ARATH6.978e-3443.75Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLI_ARATH7.758e-2937.10Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH2.589e-2237.10Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH1.257e-2137.60Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH7.906e-2031.06Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.761e-1932.50Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH6.693e-1933.57Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.142e-1830.43Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.649e-1733.57Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH5.863e-1533.61Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181814 ID=CN181814; Name=CN181814; organism=Citrus sinensis; type=EST; length=718bp
GAGGGTTGTGAAGGCATCAGTTAAAAATTGTAACACTGATTTGAACATAA
TTATCATGTCCGGGTGTTTGTTTGGTCTCCAAGGGCCTCTCCTTGATATC
CTCGGTGGAGGAACTGTTGCAGACATACTGTTATGGAAGAACAGGAATTT
ATCAGCAGCAATCCTAGTCGTGGTCACGGTTATATGGCTCCTTTTTGAGA
TTCTTGAGTACAATTTCATTACTCTTCTCTGCTACTTCCTCTGTTTCATT
ATGATCACCCTCTTCATCTGGTCTAAAGCAGCCGGCCTAATCCCCATGAG
TCCACCCACAGTTGATGAAATCAGGCTGTCGGATAGGACATGCACATCTC
TGTTTGCGAATGTCAACTGTTTACTGACGAAATTCTATGATATTTCATGT
GGGGAGAATTTAAAGCTCTATATTCTGGCTTTCTGTGCCTGGAAACACTA
CCGGCTTTGTATTTGCGATTTCAAGGGGAGGTGGATTATCTTGCCGCTAA
AAGTACTCAAGACATGCGGAGGTTGTTTAACGATTTCAATTCCAAAGTTC
TTGACAAGATTCCAAGGGCATCTGCTAAAGAAAAGAAGTATCTGTGAACA
AGGGATTTTGTAAATACCCTGGAAATAGCTTGACTAGTTAAAAGTGCCAA
AACTTTCTCCACGGCTCTAGTCTGTATGATTTTTCCAACAATGCTTTACA
TCTAAGAGGAACTAGTAC
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