CN181806

Overview
NameCN181806
Unique NameCN181806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN181806 vs. ExPASy Swiss-Prot
Match: Y1770_SYNY3 (Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803) GN=sll1770 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 30/80 (37.50%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:  444 SNELPPVEELKVLPSDESFSWANENYNSWQRIIDVWSFVLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLKESVL 683
            S  LPP +    L ++  + W   NY+  +R ID+W FVL+L  +   +  KW+Y GG++E+K + RRR+ A W++E++L
Sbjct:   15 SESLPP-QRRSPLEAEGRYRWNRGNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIRENLL 93
The following BLAST results are available for this feature:
BLAST of CN181806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1770_SYNY32.112e-1137.50Uncharacterized protein sll1770 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181806 ID=CN181806; Name=CN181806; organism=Citrus sinensis; type=EST; length=683bp
GAGGCAGCTTCGAGATTCATTTCTAAGACTTGATAGTTACTCTTTCTTCT
TCTCTTGTGTTTGTCGATTGAATGGCGGCAATACTGGCTTCACAAGGCTG
TTATTGCCACAATATTGATTTGATAAACCAAGGAAGAGATATGGACAATC
TTAGTTTCTCGAGTTCCATATCAAGCTTTGAGAGGAAAACATGTAATCCA
ACTTTGACTAATAAAGCATTTCAGTTTCATGTTGAAGCGCGGCAAACTGA
ATCTCCCTCAAGAGTTGGGACTAATGGACGATCGGTTAAGATGGTACCTG
CTAGTGAGGTGGTGAAAAGGAATAATCCACCCAATGGTAAGGTTAATAAG
ATGGTCAATGGGACAAAGCAGGTCATTAATGTTGCAGGTTTAGCTAAGAA
AAATTCTACTTCGGCCCTCGTTAAGGCACTGAAAGGCAAGGGTTCAAATG
AACTTCCACCAGTGGAGGAGCTGAAGGTTCTGCCCTCGGATGAAAGTTTC
AGTTGGGCTAATGAGAATTATAATTCCTGGCAAAGGATTATAGATGTTTG
GTCATTTGTCCTTTCATTACAAATCCGTATTCTGTTTGACAATGCCAAAT
GGGCCTATTTGGGAGGCTTCTCAGAAGATAAACAGAAAAACAGAAGACGA
AAGACTGCCTCATGGCTAAAGGAGAGTGTGCTG
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