CN181800

Overview
NameCN181800
Unique NameCN181800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:378..1075. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.043e-61
Identity = 106/175 (60.57%), Postives = 128/175 (73.14%), Query Frame = -2
Query:  185 GWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 697
            GWP AP G YAWGYCF+ E +P S+YC   P YPC  GK YYGRGP+QLSWNYNY  C            NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G++LDCYNQRP+G
Sbjct:   71 GWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLL--GNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.033e-61
Identity = 109/183 (59.56%), Postives = 132/183 (72.13%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GW  AP G YAWGYC+  E++PPS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG+G NA V +RIGF+  +C   G+  G++LDCYNQ P+G  +   SM
Sbjct:  145 GWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLL--NNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.354e-60
Identity = 107/183 (58.47%), Postives = 133/183 (72.68%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GWP AP G YAWGYCF+ E +P S YC  +  +PC    +YYGRGPIQ+SWNYNY +C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG+G ++ V++RIGF+  +C  FGI  GD+LDCY+QRP+G +L   S+
Sbjct:  137 GWPTAPDGPYAWGYCFLREQNP-STYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.380e-60
Identity = 108/183 (59.02%), Postives = 130/183 (71.04%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GW  AP G YAWGYC+  E++PPS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG+G NA V +RIGF+  +C   G+  G++LDCYNQ P+G  +   SM
Sbjct:  123 GWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLL--NNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 7.471e-60
Identity = 103/174 (59.20%), Postives = 126/174 (72.41%), Query Frame = -2
Query:  188 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 697
            GW  AP G Y+WGYCF  E +P SDYC+P+  +PC    +YYGRGP+QLSWNYNY  C           NNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG +LDCYNQR +
Sbjct:  155 GWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLL--NNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.274e-59
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GWP AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG G ++ V++RIGF+  +CG  G+ PG++LDC NQR +G  L+   M
Sbjct:  142 GWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 104/183 (56.83%), Postives = 130/183 (71.04%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GW  AP G YAWGYC++ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PGD+LDC NQR +G  L+  +M
Sbjct:  149 GWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GWP AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG G ++ V++RIGF+  +CG  G+ PGD+LDC NQR +G  L+  +M
Sbjct:  138 GWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.708e-59
Identity = 103/183 (56.28%), Postives = 128/183 (69.95%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GWP AP G YAWGYCF+ E   P DYC P+  +PC    KY+GRGPIQ+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG G ++ V++RIGF+  +CG  G+ PGD+LDC NQR +G  L+  ++
Sbjct:  138 GWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CN181800 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.843e-59
Identity = 109/183 (59.56%), Postives = 129/183 (70.49%), Query Frame = -2
Query:  161 GWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 697
            GW  AP G Y WGYC+  E++P +DYC  DPNYPC  GK Y+GRGP+QL+WNYNY +C           NNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECGQG NA V +RIGF+  +C   G+  G++LDCYNQR Y       SM
Sbjct:  143 GWA-APDGPYTWGYCYNRELNP-ADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLL--NNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
The following BLAST results are available for this feature:
BLAST of CN181800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_CARPA1.043e-6160.57Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_GOSHI3.033e-6159.56Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_PEA3.354e-6058.47Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_GOSHI4.380e-6059.02Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIB_ARATH7.471e-6059.20Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIC_SOLLC1.274e-5956.83Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_TOBAC2.174e-5956.83Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_SOLTU2.174e-5956.83Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU3.708e-5956.28Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_THECC4.843e-5959.56Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181800 ID=CN181800; Name=CN181800; organism=Citrus sinensis; type=EST; length=698bp
GAGGCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATAAG
AGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCTAA
AGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATC
ATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGTCGTTGG
TTGTAGCAATCAAGACTGTCACCAGGCTGAATCCCAAACTTGCCACAGAA
AGTGGTAAAGAACCCAATACGGTTACGTACAGCGGCATTCCCACCTTGGC
CACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCGGA
AGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATAAT
GACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGA
TTGCTGACTTGAATGATAGTACTGGATCAGTAGCAAGAAGGTCTGGATTG
TTCAACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAATT
GTAATTCCAAGAGAGTTGAATTGGACCTCGGCCATAGTACTTCCCTCGAC
ATGGATAGTTAGGATCACAGTAGTCGGACGGAGGGCTAACTTCGCTTATA
AAGCAATATCCCCAAGCATATTCGCCACCAGGTGCATCGGGCCATCCC
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