CN181798

Overview
NameCN181798
Unique NameCN181798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:187..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.640e-40
Identity = 87/100 (87.00%), Postives = 89/100 (89.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:   39 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA           GAQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   40 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA           GAQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   40 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.503e-40
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA           GAQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   40 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.882e-40
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:   40 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 86/100 (86.00%), Postives = 88/100 (88.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   40 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS14_RAT (40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            F+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   41 FVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            F+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   41 FVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            F+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   41 FVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of CN181798 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = -3 
Query:  357 FIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 656
            F+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   41 FVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
The following BLAST results are available for this feature:
BLAST of CN181798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS141_MAIZE2.640e-4087.0040S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS143_ARATH4.503e-4086.0040S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS142_ARATH4.503e-4086.0040S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS141_ARATH4.503e-4086.0040S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS142_MAIZE5.882e-4086.0040S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS14_LUPLU2.919e-3986.0040S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS14_RAT1.449e-3882.0040S ribosomal protein S14 OS=Rattus norvegicus GN=... [more]
RS14_MOUSE1.449e-3882.0040S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN1.449e-3882.0040S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR1.449e-3882.0040S ribosomal protein S14 OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181798 ID=CN181798; Name=CN181798; organism=Citrus sinensis; type=EST; length=658bp
GAGGATTAAATATAAAAAGGGATATAAAAAGGGGCGAATTGATCAACATC
TAATCATAACCACTACCATCATACTTTACCACTTAACACAATACTTGTAA
ATGTAGATAAACAATAAAATTCAGAAACTCATGGAGAAATGATTAGTCTT
GCCACTGTATAAACTTAATTGATCGGAAAGGCTAACACAAAGGAATCCGA
GACTACAGACATTCCAAACAACAAAATTGGGAAATAAGTCTTGCATCTAA
CAGAAGAGAGTGAAACTCTCGGCAACCACGGCATCATCTTGAACGTTATG
GATGGGTATGAGGAAAAGAATTACAACCTTCTACCCCTTCTACCACCCTT
TCTGCGGGTACTGTCGGTGGGAATTGGAGTCACATCCTCTATGCGGCCAA
TCTTCATTCCAGAACGAGCAAGAGCTCTAAGTGCTGACTGAGCACCTGGA
CCAGGAGTTTTAGTTTTGTTACCCCCAGTAGCCCGGAGCTTAATATGAAG
AGCAGTAATGCCAAGCTCCTTGCATCGTTGAGAAACATCTTGTGCTGCAA
GCATAGCTGCATAAGGGGAGGATTCATCCCTGTCAGCTTTAACCTTCATA
CCACCAGTAATGCGCACAAGAGTTTCTCTTCCAGACAAGTCAGTCACATG
AATGAAAG
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