CN181794

Overview
NameCN181794
Unique NameCN181794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:42..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.329e-86
Identity = 154/187 (82.35%), Postives = 167/187 (89.30%), Query Frame = 2
Query:   65 MAAVGIETKQPESAAPEEVCAAKGAS-KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            MAAVG+++++PE+A  EE C  KGA+ KQGEGL+QYYLQHIHELQ Q+RQKT+NLNRLEAQRNELNSRVRML+EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVV            PSTRVALRNDSYVLHL+LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP +
Sbjct:    1 MAAVGVDSRRPETAM-EETCNVKGAAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPEL 186          

HSP 2 Score: 38.5058 bits (88), Expect = 7.329e-86
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFESLGIAQP+GVLLY
Sbjct:  184 PELFESLGIAQPKGVLLY 201          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.030e-81
Identity = 148/187 (79.14%), Postives = 160/187 (85.56%), Query Frame = 2
Query:   65 MAAVGIETKQPESAAPEEVCAAKGAS-KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            MAAVG+E + P +A  EE C  KGA+ KQGEGL +YYLQH+ ELQ   R+K++NLNRLEAQRNELNSRVRML+EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVV            PSTRVALRNDSYVLHL+LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP +
Sbjct:    1 MAAVGVEARPPVTAM-EETCNVKGAAAKQGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPEL 186          

HSP 2 Score: 38.5058 bits (88), Expect = 3.030e-81
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFESLGIAQP+GVLLY
Sbjct:  184 PELFESLGIAQPKGVLLY 201          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.028e-63
Identity = 117/171 (68.42%), Postives = 135/171 (78.95%), Query Frame = 2
Query:  110 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP +
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL 174          

HSP 2 Score: 37.3502 bits (85), Expect = 1.028e-63
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE+LGIAQP+GVLLY
Sbjct:  172 PELFEALGIAQPKGVLLY 189          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.028e-63
Identity = 117/171 (68.42%), Postives = 135/171 (78.95%), Query Frame = 2
Query:  110 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP +
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL 174          

HSP 2 Score: 37.3502 bits (85), Expect = 1.028e-63
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE+LGIAQP+GVLLY
Sbjct:  172 PELFEALGIAQPKGVLLY 189          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.028e-63
Identity = 117/171 (68.42%), Postives = 135/171 (78.95%), Query Frame = 2
Query:  110 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP +
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL 174          

HSP 2 Score: 37.3502 bits (85), Expect = 1.028e-63
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE+LGIAQP+GVLLY
Sbjct:  172 PELFEALGIAQPKGVLLY 189          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.028e-63
Identity = 117/171 (68.42%), Postives = 135/171 (78.95%), Query Frame = 2
Query:  110 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP +
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL 174          

HSP 2 Score: 37.3502 bits (85), Expect = 1.028e-63
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE+LGIAQP+GVLLY
Sbjct:  172 PELFEALGIAQPKGVLLY 189          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.028e-63
Identity = 117/171 (68.42%), Postives = 135/171 (78.95%), Query Frame = 2
Query:  110 PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            PE++   +G  K G GLRQYYL  I ELQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP +
Sbjct:    6 PEQMELEEG--KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL 174          

HSP 2 Score: 37.3502 bits (85), Expect = 1.028e-63
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE+LGIAQP+GVLLY
Sbjct:  172 PELFEALGIAQPKGVLLY 189          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 1.460e-62
Identity = 113/164 (68.90%), Postives = 131/164 (79.88%), Query Frame = 2
Query:  131 KGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            + A  +GEG R YY+Q I ELQL V +K  NL RL+AQRNELN++VRML+EELQLLQE GSYVGEVVK M K KVLVKVHPEGK+VV            P+ RVALRN+SY LH ILP+KVDPLV+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHP +
Sbjct:   10 ESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPEL 173          

HSP 2 Score: 36.1946 bits (82), Expect = 1.460e-62
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELF++LGIAQP+GVLLY
Sbjct:  171 PELFDALGIAQPKGVLLY 188          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.498e-62
Identity = 113/159 (71.07%), Postives = 129/159 (81.13%), Query Frame = 2
Query:  140 SKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            S+ G GLRQYYL  I +LQL V  K+ NL RL+AQRNELN++VR+L+EELQLLQE GSYVGEVV+ M K KVLVKVHPEGK+VV            P+ RVALRNDSY LH ILP+KVDPLV+LM VEKVPDSTY+MIGGLD+QIKEIKEVIELP+KHP
Sbjct:    9 SRGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHP 167          

HSP 2 Score: 34.6538 bits (78), Expect = 5.498e-62
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PE FE+LGIAQP+GVLLY
Sbjct:  167 PEHFEALGIAQPKGVLLY 184          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.074e-61
Identity = 106/157 (67.52%), Postives = 129/157 (82.17%), Query Frame = 2
Query:  152 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            +G++ YY   I EL+++V +K  +L RLEAQRNELN+RVRMLKEELQLL  PGS+V EVVK+MGKNKVLVKV+PEGK+VV            PSTR AL+++SY LH ILP+K+DPLV+LMKVEK+PDSTYDM+GGLD+QIKEIKEVIELPIKHP +
Sbjct:   14 KGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPEL 170          

HSP 2 Score: 38.5058 bits (88), Expect = 2.074e-61
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFESLGIAQP+GVLLY
Sbjct:  168 PELFESLGIAQPKGVLLY 185          
The following BLAST results are available for this feature:
BLAST of CN181794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
PRS8A_ARATH7.329e-8682.3526S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS8B_ARATH3.030e-8179.1426S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8_RAT1.028e-6368.4226S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.028e-6368.4226S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.028e-6368.4226S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.028e-6368.4226S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.028e-6368.4226S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8_DROME1.460e-6268.9026S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8_XENLA5.498e-6271.0726S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_DICDI2.074e-6167.5226S protease regulatory subunit 8 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181794 ID=CN181794; Name=CN181794; organism=Citrus sinensis; type=EST; length=668bp
GAGGCGAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCG
TTCACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAA
TCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGG
AGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCC
AAGTCCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAAC
GAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCA
AGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATA
AGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGAT
AAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCG
TAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCC
TGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATG
ATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCT
TCCTATCAAACATCCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCC
AGGGGTGTATTGCTATAT
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