CN181793

Overview
NameCN181793
Unique NameCN181793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:825..1573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.010e-94
Identity = 175/179 (97.77%), Postives = 178/179 (99.44%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR DILKIHSR+MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR+HVTQEDFEMAVAKVMKK+TEKNMSLRKLWK
Sbjct:  241 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.010e-94
Identity = 175/179 (97.77%), Postives = 178/179 (99.44%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR DILKIHSR+MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR+HVTQEDFEMAVAKVMKK+TEKNMSLRKLWK
Sbjct:  241 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 2.696e-82
Identity = 151/179 (84.36%), Postives = 168/179 (93.85%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELF+MAREHAPSIIFMDEIDSIGS+R ESGSG GDSEVQRTMLELLNQLDGFE++  IKVLM TNRIDILD ALLRPGRIDRKIEFPNP +  RLDILKIHSR+MNL RGI+LKKI++KMNGASGAELKAVCTEAGM+ALRERR+HV+QEDFEMAV+KVMKK++E+NMS+ KLWK
Sbjct:  225 RMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMKKDSEQNMSINKLWK 403          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.845e-82
Identity = 154/179 (86.03%), Postives = 170/179 (94.97%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGS+R+ESGSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK
Sbjct:  225 RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 402          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 7.845e-82
Identity = 154/179 (86.03%), Postives = 170/179 (94.97%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGS+R+ESGSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK
Sbjct:  228 RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 405          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.338e-81
Identity = 153/179 (85.47%), Postives = 169/179 (94.41%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGS+R+E GSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK
Sbjct:  229 RMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.338e-81
Identity = 153/179 (85.47%), Postives = 169/179 (94.41%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGS+R+E GSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK
Sbjct:  229 RMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.338e-81
Identity = 153/179 (85.47%), Postives = 169/179 (94.41%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGS+R+E GSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK
Sbjct:  229 RMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.338e-81
Identity = 153/179 (85.47%), Postives = 169/179 (94.41%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGS+R+E GSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK
Sbjct:  229 RMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.338e-81
Identity = 153/179 (85.47%), Postives = 169/179 (94.41%), Query Frame = -2
Query:  212 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 748
            RMVRELFVMAREHAPSIIFMDEIDSIGS+R+E GSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK
Sbjct:  229 RMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406          
The following BLAST results are available for this feature:
BLAST of CN181793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 367
Match NameE-valueIdentityDescription
PRS8B_ARATH4.010e-9497.7726S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH4.010e-9497.7726S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS8_DICDI2.696e-8284.3626S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS8_MANSE7.845e-8286.0326S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_DROME7.845e-8286.0326S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8_RAT1.338e-8185.4726S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.338e-8185.4726S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.338e-8185.4726S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.338e-8185.4726S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.338e-8185.4726S protease regulatory subunit 8 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181793 ID=CN181793; Name=CN181793; organism=Citrus sinensis; type=EST; length=749bp
CTTTTTTTTCCGAATTGATGCGAATTTAATTTAGATAAAATAGATTGCAA
ATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCT
AAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAG
GACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACAT
GGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTC
TTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACAT
GGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCC
TTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAA
ATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATAT
CAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATT
CGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGC
CATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGA
GCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCA
GATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAATGAT
AGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTG
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