CN181788

Overview
NameCN181788
Unique NameCN181788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2282 contig Csv1_Contig2282:1..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.280e-87
Identity = 158/199 (79.40%), Postives = 178/199 (89.45%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            LV+LA V+VGK+YELV+TTYAGLNRYR+GDIL VTG+YNSAPQF+FV+RKNVLLSI+SDKTDEAELQ  ++NASLLL E    VIEYTSYA+T TIPGHYVI+WELLVKD  N P+DEV+ +CCL +EESLNSVYRQ RVAD SIGPLEIRVVKNGTFEELMDYAISRGASINQYK PRCVSFTPI+ELL+ +VVS  F
Sbjct:  384 LVELADVEVGKEYELVITTYAGLNRYRVGDILQVTGFYNSAPQFKFVRRKNVLLSIESDKTDEAELQSAVENASLLLGEQGTRVIEYTSYAETKTIPGHYVIYWELLVKDQTNPPNDEVMARCCLEMEESLNSVYRQSRVADKSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSTHF 582          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.115e-82
Identity = 149/201 (74.13%), Postives = 175/201 (87.06%), Query Frame = 1
Query:   52 RLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLL-KEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            + V+L  V +GK+YELVVTTYAGL RYR+GDIL VTG++NSAPQF FV+RKNVLLSIDSDKTDE+ELQK ++NAS +L +E  + V EYTSYADT+TIPGHYV++WELLV+D A  PS E L +CCL +EESLNSVYRQ RVADNS+GPLEIRVV+NGTFEELMDYAISRGASINQYK PRCV+FTPI+ELL+ +VVS  F
Sbjct:  376 KAVELVDVNIGKEYELVVTTYAGLCRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASSILHEECGSRVAEYTSYADTSTIPGHYVLYWELLVRDGARQPSHETLTRCCLGMEESLNSVYRQSRVADNSVGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVNFTPIVELLDSRVVSAHF 576          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.979e-80
Identity = 145/200 (72.50%), Postives = 177/200 (88.50%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANS-PSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            LV+LA V+VGK+YELV+TTYAGL RYR+GDIL VTG++NSAPQF+F++R+NVLLSI+SDKTDEA+LQK ++NAS LL E    VIEYTSYADT TIPGHYVI+WELL +D +N+ PSDEV+ +CCL +EESLN+VYRQ RV+D SIGPLEIRVV+NGTFEELMD++ISRG+SINQYK PRCVS TPI++LL+ +VVS  F
Sbjct:  385 LVELADVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRENVLLSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSYADTKTIPGHYVIYWELLSRDQSNALPSDEVMAKCCLEMEESLNAVYRQSRVSDKSIGPLEIRVVQNGTFEELMDFSISRGSSINQYKVPRCVSLTPIMKLLDSRVVSAHF 584          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.048e-77
Identity = 142/201 (70.65%), Postives = 171/201 (85.07%), Query Frame = 1
Query:   52 RLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSD-EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            +LVDLA V+VG++YELV+TTYAGLNRYR+GD+L VTG++N+APQFRFV+RKNVLLSI+SDKTDEAELQ+ ++ AS LL+   ASV+EYTS A T  IPGHYVI+WELL K A  +  D + L +CCL +EE+LN+VYRQ RVAD SIGPLEIRVV+ GTFEELMDYAISRGASINQYK PRCV+F PI+ELL+ +VVS  F
Sbjct:  391 QLVDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGASVVEYTSQACTKRIPGHYVIYWELLTKGAGATVVDADTLGRCCLEMEEALNTVYRQSRVADGSIGPLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHF 591          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.048e-77
Identity = 142/201 (70.65%), Postives = 171/201 (85.07%), Query Frame = 1
Query:   52 RLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSD-EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            +LVDLA V+VG++YELV+TTYAGLNRYR+GD+L VTG++N+APQFRFV+RKNVLLSI+SDKTDEAELQ+ ++ AS LL+   ASV+EYTS A T  IPGHYVI+WELL K A  +  D + L +CCL +EE+LN+VYRQ RVAD SIGPLEIRVV+ GTFEELMDYAISRGASINQYK PRCV+F PI+ELL+ +VVS  F
Sbjct:  391 QLVDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGASVVEYTSQACTKRIPGHYVIYWELLTKGAGATVVDADTLGRCCLEMEEALNTVYRQSRVADGSIGPLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHF 591          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.863e-76
Identity = 142/206 (68.93%), Postives = 174/206 (84.47%), Query Frame = 1
Query:   52 RLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKD--AANSPSDE----VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            RLVDLA  +VG++YELV+TTYAGL RYR+GDIL VTG++N+APQFRFV+RKNVLLSIDSDKTDEAELQ  ++ AS LL  + AS++EYTS AD TTIPGHYV++WEL+V++  A   P++E    V  +CCL +EE+LN+VYRQGR  + +IGPLEIRVV+ GTFEE+MDYAISRGASINQYKAPRCVSF PI+ELLN +V+SK F
Sbjct:  398 RLVDLADAEVGREYELVITTYAGLCRYRVGDILQVTGFHNAAPQFRFVRRKNVLLSIDSDKTDEAELQAAVERASALLSPYGASIVEYTSQADATTIPGHYVVYWELMVREGGAWPPPAEEEGRGVFERCCLEMEEALNAVYRQGRNGE-AIGPLEIRVVRAGTFEEVMDYAISRGASINQYKAPRCVSFGPIIELLNSRVISKHF 602          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.382e-71
Identity = 132/200 (66.00%), Postives = 160/200 (80.00%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSP-SDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            LVDL  V++G++YELVVTTYAGL RYR+GD+L V G+ N+APQF F+ RKNV+LSIDSDKTDE ELQ  + NA   L  F+AS+ EYTSYADT++IPGHYV+FWEL +    N+P    V   CCL +EESLNSVYRQGRV+D SIGPLEI++V++GTF++LMDYAIS GASINQYK PRCV F PI+ELLN +VV   F
Sbjct:  398 LVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLN--GNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYF 595          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.167e-70
Identity = 131/199 (65.83%), Postives = 156/199 (78.39%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            LVDL  V++G++YELVVTTYAGL RYR+GD+L VTG+ N APQF F+ RKNV+LSIDSDKTDE ELQ  + NA   L  F+AS+ EYTSYADT++IPGHYV+FWEL + D        V   CCL VEES N+VYRQGRV+D SIGPLEI++V+ GTF++LMDYAIS GASINQYK PRCV F PI+ELLN +VV   F
Sbjct:  398 LVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCL-DGNTPIPPSVFEDCCLAVEESFNTVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYF 595          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.591e-67
Identity = 129/200 (64.50%), Postives = 151/200 (75.50%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADT-TTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            LVDL  V++G +YELVVTTY+GL RYR+GD+L V G+ N+AP F FV+RKNV LSIDSDKTDEAEL   +  A   L  F AS++EYTSYADT TTIPGHYV+FWEL            V   CCL VEE LNSVYRQ R AD SIGPLEIRVV +GTF++LMDYA+SRGASINQYKAPRCV   P++ELL+G+V +  F
Sbjct:  396 LVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNAAPMFAFVRRKNVALSIDSDKTDEAELHAAVTEAVQHLAPFGASLVEYTSYADTATTIPGHYVLFWELRSPAGGTPVPASVFEDCCLAVEEGLNSVYRQCRAADRSIGPLEIRVVADGTFDKLMDYALSRGASINQYKAPRCVRPGPVVELLDGRVQATYF 595          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 9.537e-67
Identity = 127/199 (63.82%), Postives = 149/199 (74.87%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            LVDL  V++G +YELVVTTY+GL RYR+GD+L V G+ N AP F FV+R+NV LS+DSDKTDE EL   +  A   L  F AS++EYTSYAD  TIPGHYV+FWEL     A   S  V  +CCL VEE+LNSVYRQGR  D SIGPLEIRVV  GTF++LMDYAISRGASINQYKAPRCV   P++ELL+ +V  K F
Sbjct:  388 LVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNKAPMFSFVRRQNVALSVDSDKTDETELHAAVSGAVQHLAPFGASLVEYTSYADAATIPGHYVLFWELRAGSTAVPAS--VFEECCLSVEEALNSVYRQGRACDRSIGPLEIRVVAEGTFDKLMDYAISRGASINQYKAPRCVRPGPVVELLDARVQGKYF 584          
The following BLAST results are available for this feature:
BLAST of CN181788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GH33_ARATH1.280e-8779.40Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH31_ARATH2.115e-8274.13Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ARATH1.979e-8072.50Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH38_ORYSJ2.048e-7770.65Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI2.048e-7770.65Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ORYSJ3.863e-7668.93Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH6.382e-7166.00Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH35_ARATH3.167e-7065.83Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH34_ORYSJ5.591e-6764.50Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH31_ORYSJ9.537e-6763.82Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181788 ID=CN181788; Name=CN181788; organism=Citrus sinensis; type=EST; length=651bp
GTCTTGCCTCACGACCCAAATTATCCTCCTCTCTCTCCTGAATCACCTCC
ACGCCTTGTTGATCTCGCCCACGTCCAAGTTGGCAAACAGTATGAGCTTG
TGGTCACAACCTACGCTGGCCTGAACCGTTACCGAATTGGTGACATCCTC
CTTGTCACCGGATACTACAACTCGGCTCCCCAATTTCGTTTTGTCAAAAG
AAAGAATGTTTTGTTGAGCATTGACTCAGACAAAACCGACGAGGCTGAAC
TGCAAAAGGGCATTGATAATGCTTCCTTGCTGTTGAAGGAATTCAACGCC
AGCGTCATTGAGTACACAAGTTATGCTGACACAACGACAATTCCAGGACA
TTATGTGATATTCTGGGAGTTGCTTGTTAAAGATGCAGCCAATTCACCAA
GTGATGAGGTGCTGAATCAATGTTGCCTGGTAGTGGAAGAGTCGCTGAAC
TCGGTGTATCGACAAGGCCGAGTTGCTGATAATTCAATTGGACCACTAGA
GATAAGGGTGGTGAAAAATGGGACATTTGAGGAGCTAATGGACTATGCCA
TTTCAAGGGGCGCGTCAATTAATCAGTACAAAGCGCCAAGGTGTGTTAGT
TTCACTCCCATTCTGGAACTGCTTAATGGTAAGGTGGTCTCAAAAGCATT
T
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