CN181787

Overview
NameCN181787
Unique NameCN181787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181787_ssr226 microsatellite CN181787_ssr226:226..235. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.502e-50
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = -2
Query:  369 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 707
            YVI+WELLVKD  N P+DEV+ +CCL +EESLNSVYRQ RVAD SIGPLEIRVVKNGTFEELMDYAISRGASINQYK PRCVSFTPI+ELL+ RVVS HFSPA PHW PERRR
Sbjct:  483 YVIYWELLVKDQTNPPNDEVMARCCLEMEESLNSVYRQSRVADKSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSTHFSPALPHWSPERRR 595          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 89/113 (78.76%), Postives = 100/113 (88.50%), Query Frame = -2
Query:  369 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 707
            YV++WELLV+D A  PS E L +CCL +EESLNSVYRQ RVADNS+GPLEIRVV+NGTFEELMDYAISRGASINQYK PRCV+FTPI+ELL+ RVVS HFSP+ PHW PERRR
Sbjct:  477 YVLYWELLVRDGARQPSHETLTRCCLGMEESLNSVYRQSRVADNSVGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVNFTPIVELLDSRVVSAHFSPSLPHWTPERRR 589          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.695e-44
Identity = 83/113 (73.45%), Postives = 100/113 (88.50%), Query Frame = -2
Query:  372 YVIFWELLVKDAANS-PSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 707
            YVI+WELL +D +N+ PSDEV+ +CCL +EESLN+VYRQ RV+D SIGPLEIRVV+NGTFEELMD++ISRG+SINQYK PRCVS TPI++LL+ RVVS HFSP+ PHW PERR
Sbjct:  484 YVIYWELLSRDQSNALPSDEVMAKCCLEMEESLNAVYRQSRVSDKSIGPLEIRVVQNGTFEELMDFSISRGSSINQYKVPRCVSLTPIMKLLDSRVVSAHFSPSLPHWSPERR 596          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 82/113 (72.57%), Postives = 93/113 (82.30%), Query Frame = -2
Query:  372 YVIFWELLVKDAANSPSD-EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 707
            YVI+WELL K A  +  D + L +CCL +EE+LN+VYRQ RVAD SIGPLEIRVV+ GTFEELMDYAISRGASINQYK PRCV+F PI+ELL+ RVVS HFSPA PHW P RR
Sbjct:  491 YVIYWELLTKGAGATVVDADTLGRCCLEMEEALNTVYRQSRVADGSIGPLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHFSPALPHWTPARR 603          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 82/113 (72.57%), Postives = 93/113 (82.30%), Query Frame = -2
Query:  372 YVIFWELLVKDAANSPSD-EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 707
            YVI+WELL K A  +  D + L +CCL +EE+LN+VYRQ RVAD SIGPLEIRVV+ GTFEELMDYAISRGASINQYK PRCV+F PI+ELL+ RVVS HFSPA PHW P RR
Sbjct:  491 YVIYWELLTKGAGATVVDADTLGRCCLEMEEALNTVYRQSRVADGSIGPLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHFSPALPHWTPARR 603          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.651e-36
Identity = 76/118 (64.41%), Postives = 96/118 (81.36%), Query Frame = -2
Query:  372 YVIFWELLVKD--AANSPSDE----VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 707
            YV++WEL+V++  A   P++E    V  +CCL +EE+LN+VYRQGR  + +IGPLEIRVV+ GTFEE+MDYAISRGASINQYKAPRCVSF PI+ELLN RV+SKHFSPA P + P ++
Sbjct:  498 YVVYWELMVREGGAWPPPAEEEGRGVFERCCLEMEEALNAVYRQGRNGE-AIGPLEIRVVRAGTFEEVMDYAISRGASINQYKAPRCVSFGPIIELLNSRVISKHFSPACPKYSPHKK 614          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  363 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR*G 707
            YV+FWEL +      P   V   CCL +EESLNSVYRQGRV+D SIGPLEI++V++GTF++LMDYAIS GASINQYK PRCV F PI+ELLN RVV  +FSP  P W P  ++ G
Sbjct:  497 YVLFWELCLNGNTPIPPS-VFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCPKWSPGHKQWG 610          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = -2
Query:  363 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR*G 707
            YV+FWEL +      P   V   CCL VEES N+VYRQGRV+D SIGPLEI++V+ GTF++LMDYAIS GASINQYK PRCV F PI+ELLN RVV  +FSP  P WVP  ++ G
Sbjct:  497 YVLFWELCLDGNTPIPPS-VFEDCCLAVEESFNTVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCPKWVPGHKQWG 610          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.232e-34
Identity = 72/113 (63.72%), Postives = 83/113 (73.45%), Query Frame = -2
Query:  369 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 707
            YV+FWEL     A   S  V  +CCL VEE+LNSVYRQGR  D SIGPLEIRVV  GTF++LMDYAISRGASINQYKAPRCV   P++ELL+ RV  K+FSP  P W P  ++
Sbjct:  487 YVLFWELRAGSTAVPAS--VFEECCLSVEEALNSVYRQGRACDRSIGPLEIRVVAEGTFDKLMDYAISRGASINQYKAPRCVRPGPVVELLDARVQGKYFSPKCPKWSPGNKQ 597          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.428e-34
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = -2
Query:  372 YVIFWELLVKDAA-----NSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 707
            YV++WELL +        ++   E L +CCL +EE+L++VYRQGRVAD SIGPLEIR+V+ GTFEE+MD A+SRG SI QYK P+CV+   ++ELL+ RVVS  FSPA PHW+P  R
Sbjct:  323 YVVYWELLTESPVGAGDGDTVDGETLGRCCLEMEEALSAVYRQGRVADGSIGPLEIRIVRPGTFEEVMDLAVSRGTSIGQYKVPQCVTVPSVVELLDSRVVSSQFSPALPHWIPTPR 439          
The following BLAST results are available for this feature:
BLAST of CN181787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GH33_ARATH5.502e-5083.19Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH31_ARATH1.770e-4878.76Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ARATH7.695e-4473.45Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH38_ORYSJ2.096e-4172.57Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI2.096e-4172.57Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ORYSJ2.651e-3664.41Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH4.522e-3662.61Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH35_ARATH7.713e-3662.61Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH31_ORYSJ4.232e-3463.72Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ORYSJ9.428e-3457.26Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181787 ID=CN181787; Name=CN181787; organism=Citrus sinensis; type=EST; length=708bp
CATGGCAAGCACTTCCAACGCCTTTTCCTCAACTTTCAGAAAGCTGAAAG
AAAATTAAAAGAGACACGACGACGACAACGACATGCCATCGACATTCCAT
AGACACTTACATCACGCGCACAGGGAGATTATGTGAACTTATTGCACAAA
CACACACTACCATCAAATTTCAAAAGAAGCTAAAAGACGCTTTTAAAAGT
TCAATTAACAACAAAGAGATGACATAGAGAGAGAGGCTGCTCTGAATCTG
ATCTCGGTCTCCTCAAGCTACTAGCTGGACCTTTTTGGTTGGAACCCCTG
GAAAATTTCTCTAGAAATTTCTTTATTCTATAGTGCCATACATGACGCTC
GTCATGGTGCAGTCCTCAACGTCGTCGTTCTGGGACCCAGTGAGGAGCAG
CTGGGCTAAAATGCTTTGAGACCACCCTACCATTAAGCAGTTCCAGAATG
GGAGTGAAACTAACACACCTTGGCGCTTTGTACTGATTAATTGACGCGCC
CCTTGAAATGGCATAGTCCATTAGCTCCTCAAATGTCCCATTTTTCACCA
CCCTTATCTCTAGTGGTCCAATTGAATTATCAGCAACTCGGCCTTGTCGA
TACACCGAGTTCAGCGACTCTTCCACTACCAGGCAACATTGATTCAGCAC
CTCATCACTTGGTGAATTGGCTGCATCTTTAACAAGCAACTCCCAGAATA
TCACATAA
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