CN181781

Overview
NameCN181781
Unique NameCN181781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181781_ssr104 microsatellite CN181781_ssr104:104..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2495 contig Csv1_Contig2495:362..1073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECH1_PONAB (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Pongo abelii GN=ECH1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.871e-38
Identity = 88/169 (52.07%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  216 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF-GTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLK---EAMSSNIQKRKPVFAKL 707
            KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF      LD  + L AE I+ KSP+AV  TK  LL SR+ +V + L+YVA+WN  ML + DL    +A + N + +   F+KL
Sbjct:  161 KPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAE-ISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSMLQTQDLMKSVQAATENKELKSVTFSKL 328          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECH1_MOUSE (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus musculus GN=Ech1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 77/158 (48.73%), Postives = 113/158 (71.52%), Query Frame = -3
Query:  237 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKR 707
            KPVIA+IHG CIGGGVD+V+ACDIR+C++DAFF +KEVD+ + AD+GTLQRLP ++G  + + EL  + R+    EA + GLVSRVF     +      +A  I+ KSP+AV G+K  L+ SR+ +V++ LDY+ATWN  ML + D+ +++ + ++KR
Sbjct:  160 KPVIAAIHGGCIGGGVDLVSACDIRYCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSRVFQDKDAMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKR 317          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECH1_HUMAN (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Homo sapiens GN=ECH1 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 88/169 (52.07%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  216 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF-GTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDL---KEAMSSNIQKRKPVFAKL 707
            KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF      LD  + L AE I+ KSP+AV  TK  LL SR+ +V + L+YVA+WN  ML + DL    +A + N + +   F+KL
Sbjct:  161 KPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAE-ISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSMLQTQDLVKSVQATTENKELKTVTFSKL 328          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECH1_RAT (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Rattus norvegicus GN=Ech1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 77/158 (48.73%), Postives = 113/158 (71.52%), Query Frame = -3
Query:  237 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKR 707
            KPVIA+IHG CIGGGVD+++ACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + EL  T R+    EA + GLVSRVF     +      +A  I+ KSP+AV G+K  L+ SR+ +V++ LDY+ATWN  ML + D+ +++ + ++K+
Sbjct:  160 KPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKK 317          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECH1_DICDI (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Dictyostelium discoideum GN=ech1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 82/161 (50.93%), Postives = 105/161 (65.22%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 707
            KP IA IHGACIGGGVD++TACDIR CS DA FS++E  L+I ADLGTLQR+  IVG G A ELALTG+      A+   LV+ V+     L    R +A  IA+ SPL V  TK  L  + + T+++GL  VA  N+  L SDDL E+ +S  +KR+P+F
Sbjct:  129 KPTIALIHGACIGGGVDMITACDIRLCSSDAKFSIRETKLSIIADLGTLQRISKIVGSGFARELALTGKDIDAKTAERFNLVNHVYPDHDTLLSEGRKLALSIAQNSPLVVQATKLTLNHADDHTIDEGLYRVALQNAAFLKSDDLNESATSFFEKRQPIF 289          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHM_CAEEL (Probable enoyl-CoA hydratase, mitochondrial OS=Caenorhabditis elegans GN=ech-6 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = -3
Query:  231 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKP 710
            +KPVIA+++G  +GGG ++   CDI +  + A F   E+++      G  QR     G   AME+ LTG      EAKE G+VS++F     + + V+L  E IA++SPL V   K  + ++ ELT+++GL +          + D KE M++  +KRKP
Sbjct:  125 KKPVIAAVNGFALGGGNELAMMCDIIYAGEKARFGQPEINIGTIPGAGGTQRWARAAGKSFAMEVCLTGNHVTAQEAKEHGIVSKIFPADQVVGEAVKL-GEKIADQSPLIVQMAKEAVNKAYELTLQEGLHFERRLFHATFATKDRKEGMTAFAEKRKP 283          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 707
            KP+IA+IHGA +GGG+++  AC IR  ++DA   + E++L I       QRLP  VG   A+EL  +G    G EA +LGLVS       E+ +  + +A   AEKSP  +     +L  ++  + E  L   A        S+D KE + + ++KRKP F
Sbjct:   95 KPIIAAIHGAALGGGLELAMACHIRIAAEDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALELIGSGEPISGKEALDLGLVSIGAKDEAEVIEKAKALAAKFAEKSPQTLASLLELLYSNKVYSYEGSLKLEAKRFGEAFESEDAKEGIQAFLEKRKPQF 255          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHM_DICDI (Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 56/162 (34.57%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  225 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 710
            RKP+IA+++G  +GGG ++   CDI    + A F   E+ L      G  QRL   +G   AMEL LTG     +EA++ GLVS+V      L +  ++ AE IA  S L V   K  +  S ELT+++G+ +          + D KE M++ ++KR P +
Sbjct:  114 RKPIIAAVNGYALGGGCELAMMCDIIIAGEKAVFGQPEIKLGTIPGCGGTQRLIRAIGKSKAMELVLTGNNLTAVEAEKAGLVSKVVPVEELLTEATKM-AEKIASYSQLTVAMAKEAVNASYELTLQEGIRFERRMFHSTFGTHDQKEGMNAFVEKRTPTW 274          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHH_RHIME (Probable enoyl-CoA hydratase OS=Rhizobium meliloti GN=fadB1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 60/162 (37.04%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  225 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 710
            RKP+IA++ G  +GGG ++   CD    S+ A F   E+ L +   +G  QRL   VG   AM+L LTGR     EA+  GLVSRV      L++ +   AE IA  S  A    K  + RS ELT+ +GL +       +  ++D KE M++ + KRK  F
Sbjct:   94 RKPMIAAVSGFALGGGCELAMMCDFIIASETAKFGQPEITLGVIPGMGGSQRLTRAVGKAKAMDLILTGRMMDAAEAERSGLVSRVVAPDRLLEEALG-AAEKIASFSLPAAMMAKEAVNRSLELTLAEGLRFERRLFQSLFATEDQKEGMAAFVAKRKAEF 254          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: CRT_CLOAB (3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum GN=crt PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = -3
Query:  234 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRK 707
            KPVIA+++G  +GGG +I  +CDIR  S +A F   EV L IT   G  QRL  +VG G A +L  T +     EA  +GLV++V   S EL    + +A  I   +P+AV  +K  + R  +  ++  L + +        ++D K+AM++ I+KRK
Sbjct:   98 KPVIAAVNGFALGGGCEIAMSCDIRIASSNARFGQPEVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPS-ELMNTAKEIANKIVSNAPVAVKLSKQAINRGMQCDIDTALAFESEAFGECFSTEDQKDAMTAFIEKRK 254          
The following BLAST results are available for this feature:
BLAST of CN181781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
ECH1_PONAB4.871e-3852.07Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_MOUSE8.308e-3848.73Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_HUMAN8.308e-3852.07Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_RAT1.085e-3748.73Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_DICDI7.776e-3650.93Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECHM_CAEEL2.056e-2035.00Probable enoyl-CoA hydratase, mitochondrial OS=Cae... [more]
FADB_BACSU4.580e-2036.02Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
ECHM_DICDI1.740e-1934.57Probable enoyl-CoA hydratase, mitochondrial OS=Dic... [more]
ECHH_RHIME1.740e-1937.04Probable enoyl-CoA hydratase OS=Rhizobium meliloti... [more]
CRT_CLOAB2.969e-1936.083-hydroxybutyryl-CoA dehydratase OS=Clostridium ac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181781 ID=CN181781; Name=CN181781; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTGAATTAAAGAATGAAAACTTGATTCCTATGAAA
GGGTAAGGAATCAACTTCCTATTTTATAATTTCACTTCTGTCCTCAAATA
AAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAG
TGCGTTGCGTTGCGATGGACGGTTAAGATACAGATAAATGAAAGAAGAAA
GGGGTAATAACATCAGAGCTTGGCAAAAACAGGCTTCCTTTTCTGGATAT
TTGAAGACATTGCCTCCTTCAAATCATCGGACAGAAGCATACCGGAGTTC
CAAGTTGCCACGTAATCTAACCCTTGTTCCACAGTAAGCTCTCGGCTTCT
CAGTAAAACCGCTTTTGTCCCGGTGACGGCAAGAGGAGATTTTTCAGCAA
TTCCCTCGGCAACAAGCCTGACACCCTGATCCAATTCATAACTCGTCCCG
AAAACCCGAGAAACCAGACCCAACTCCTTAGCCTCCAAACCCCAAAACCT
ACGACCCGTCAACGCCAATTCCATCGCGTTACCATACCCGACAATCGCCG
GAAGCCTCTGTAAAGTCCCGAGATCTGCCGTGATAGCCAAGTCAACCTCT
TTGACCGAAAAAAAAGCATCTTTTGAACAGAACCGAATATCACAGGCAGT
GACAATATCGACGCCGCCTCCGATACACGCCCCGTGGATAGATGCGATGA
CTGGCTTCCGAC
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