CN181780

Overview
NameCN181780
Unique NameCN181780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:169..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.354e-29
Identity = 70/160 (43.75%), Postives = 84/160 (52.50%), Query Frame = 2
Query:   68 CLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--DLLACCGFLCGE 529
            CLL LG   S+              H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+  DLL CCG +CG+
Sbjct:   10 CLLALGDARSRP-----------SFHPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGD 148          

HSP 2 Score: 32.3426 bits (72), Expect = 1.354e-29
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  528 NGCDGGYPISAWRYFVHHGVVT 593
            +GC+GGYP  AW ++   G+V+
Sbjct:  148 DGCNGGYPAGAWNFWTRKGLVS 169          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.890e-29
Identity = 64/135 (47.41%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  143 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--DLLACCGFLCGE 529
            H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+  DLL CCG +CG+
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDVSYLKKLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGD 148          

HSP 2 Score: 32.3426 bits (72), Expect = 3.890e-29
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  528 NGCDGGYPISAWRYFVHHGVVT 593
            +GC+GGYP  AW ++   G+V+
Sbjct:  148 DGCNGGYPAEAWNFWTRKGLVS 169          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.118e-28
Identity = 63/135 (46.67%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  143 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--DLLACCGFLCGE 529
            H L D ++  VN+     W+A  N  F N  +   K L G         LG P         + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+  DLL CCG +CG+
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGD 148          

HSP 2 Score: 32.3426 bits (72), Expect = 1.118e-28
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  528 NGCDGGYPISAWRYFVHHGVVT 593
            +GC+GGYP  AW ++   G+V+
Sbjct:  148 DGCNGGYPAEAWNFWTRKGLVS 169          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 5.442e-28
Identity = 62/139 (44.60%), Postives = 78/139 (56.12%), Query Frame = 2
Query:  131 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGE 529
            K  SH L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP+SFDAR  W  C TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S  DLL CCG  CG+
Sbjct:   20 KPSSHPLSDDMINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPNLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGD 148          

HSP 2 Score: 31.9574 bits (71), Expect = 5.442e-28
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  528 NGCDGGYPISAWRYFVHHGVVT 593
            +GC+GGYP  AW ++   G+V+
Sbjct:  148 DGCNGGYPSGAWNFWTRKGLVS 169          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.842e-27
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 2
Query:   86 VISSQTFAEG-VVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF--GMNLSLSVNDLLACC 511
            ++S  TF E  V ++       L D +I  +NE+P AGWKA ++ +F  +++   + L+G +     +       V  HD ++++P  FD+R  WP C +IS+I DQ  CGSCWAFGAVEA++DR CI    G +  LS  DL++CC
Sbjct:    8 IVSLFTFLEAHVTTRNNQRIEPLSDEMISFINEHPDAGWKADKSDRF--HSLDDARILMGARKEDAEMKRNRRPTVDHHDLNVEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLISCC 152          

HSP 2 Score: 33.113 bits (74), Expect = 5.842e-27
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  528 NGCDGGYPISAWRYFVHHGVVT 593
            +GC GG+P  AW Y+V  G+VT
Sbjct:  157 DGCQGGFPGVAWDYWVKRGIVT 178          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.678e-26
Identity = 68/165 (41.21%), Postives = 85/165 (51.52%), Query Frame = 2
Query:   53 LFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVK----THDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGE 529
            L L +CLL L      T A       K   H L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP++FDAR  W  C TI +I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S  DLL CCG  CG+
Sbjct:    5 LILLSCLLAL------TSAHD-----KPSFHPLSDDLINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPKLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGD 148          

HSP 2 Score: 31.187 bits (69), Expect = 1.678e-26
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  528 NGCDGGYPISAWRYFVHHGVVT 593
            +GC+GGYP  AW ++   G+V+
Sbjct:  148 DGCNGGYPSGAWSFWTKKGLVS 169          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.806e-26
Identity = 66/180 (36.67%), Postives = 92/180 (51.11%), Query Frame = 2
Query:   53 LFLTTCLLILGVISSQTFAEGVVSKLK---LDSHILQ---DSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVP------------VKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNDLLAC---CGFLC 523
            L   +C+++    +     E V+ K +   +DS   +   D +I  VNEN    W A +  +FS+        + G     K  L+GV              KT D  L +P+SFD+R  WP+C +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LS +DLL+C   CGF C
Sbjct:    4 LLFLSCIVVAAYCACNDNLESVLDKYRNREIDSEAAELDGDDLIDYVNENQNL-WTAKKQRRFSS--------VYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGC 174          

HSP 2 Score: 36.5798 bits (83), Expect = 4.806e-26
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  531 GCDGGYPISAWRYFVHHGVVT 593
            GC+GG P++AWRY+V  G+VT
Sbjct:  173 GCNGGDPLAAWRYWVKDGIVT 193          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 105.916 bits (263), Expect = 1.800e-25
Identity = 59/132 (44.70%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  149 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK---SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGE 529
            L D ++  VN+     WKA  N  F N  +   K L G       +L G  +   D     + LP+SFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S  D+L CCG  CG+
Sbjct:   26 LSDELVNFVNKQ-NTTWKAGHN--FYNVDLSYVKKLCGA------ILGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGD 148          

HSP 2 Score: 30.0314 bits (66), Expect = 1.800e-25
Identity = 9/22 (40.91%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  528 NGCDGGYPISAWRYFVHHGVVT 593
            +GC+GG+P  AW ++   G+V+
Sbjct:  148 DGCNGGFPSGAWNFWTKKGLVS 169          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.341e-25
Identity = 56/132 (42.42%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  149 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--DLLACCGFLCG 526
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+  DLL+CCGF CG
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECG 147          

HSP 2 Score: 35.4242 bits (80), Expect = 2.341e-25
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  531 GCDGGYPISAWRYFVHHGVVT 593
            GC+GGYP  AWRY+   G+V+
Sbjct:  149 GCNGGYPSGAWRYWTERGLVS 169          
BLAST of CN181780 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.047e-25
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 2
Query:   77 ILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACC 511
            IL + S  TF E  +S        L D II  +NE+P AGW+A ++ +F  +++   +  +G +     L       V  +D ++++P +FD+R  WP C +I+ I DQ  CGSCW+FGAVEA+SDR CI  G   N+ LS  DLL CC
Sbjct:    5 ILCIASLITFLEAHISVKNEKFEPLSDDIISYINEHPNAGWRAEKSNRF--HSLDDARIQMGARREEPDLRRKRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCC 151          

HSP 2 Score: 28.4906 bits (62), Expect = 3.047e-25
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 3
Query:  531 GCDGGYPISAWRYFVHHGVVT 593
            GC+GG    AW Y+V  G+VT
Sbjct:  157 GCEGGILGPAWDYWVKEGIVT 177          
The following BLAST results are available for this feature:
BLAST of CN181780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CATB_MACFA1.354e-2943.75Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_PONAB3.890e-2947.41Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_HUMAN1.118e-2846.67Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_RAT5.442e-2844.60Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CYSP_SCHJA5.842e-2738.78Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_MOUSE1.678e-2641.21Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CPR6_CAEEL4.806e-2636.67Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CATB_BOVIN1.800e-2544.70Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_CHICK2.341e-2542.42Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CYSP_SCHMA3.047e-2539.60Cathepsin B-like cysteine proteinase OS=Schistosom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181780 ID=CN181780; Name=CN181780; organism=Citrus sinensis; type=EST; length=617bp
GAGGCTCCTCTCTTCGTCCTTCCCGAGCCAGTCATCCATGGCTTCATCTC
ACCTCTTTCTTACTACATGTTTGTTAATTCTTGGCGTTATCTCCTCCCAG
ACTTTTGCAGAGGGAGTGGTTTCCAAGCTCAAGCTTGATTCTCATATTCT
CCAGGATTCAATCATCAAAGAAGTGAATGAGAACCCTAAGGCTGGATGGA
AAGCTGCCAGAAATCCTCAATTTTCCAATTACACTGTTGGGCAATTTAAG
CACCTTCTTGGAGTCAAGCCAACACCTAAAGGGCTGCTCTTGGGTGTCCC
TGTTAAAACTCATGACAAATCCTTGAAGTTGCCTAAAAGCTTTGATGCAA
GGTCCGCTTGGCCACAATGCAGCACCATTAGTAGGATCCTAGATCAGGGC
CATTGTGGTTCTTGTTGGGCTTTTGGTGCTGTTGAAGCGCTATCTGATCG
TTTCTGCATCCATTTTGGCATGAACCTATCTCTATCAGTTAATGATCTTT
TAGCCTGCTGTGGCTTTTTGTGTGGAGAATGGTTGTGACGGGGGTTATCC
AATTTCTGCATGGCGATACTTTGTCCACCATGGTGTTGTTACCGAAAGAG
TGTGATCCCTACTTTTG
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